Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P17
(220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 0.59
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 0.78
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 1.0
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 2.4
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 24 3.1
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 23 4.1
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 23 5.5
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar... 23 5.5
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 23 7.2
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 23 7.2
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 23 7.2
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 23 7.2
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 23 7.2
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 23 7.2
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 23 7.2
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 22 9.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 22 9.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 22 9.6
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 22 9.6
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 22 9.6
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 22 9.6
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 26.2 bits (55), Expect = 0.59
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 46 FTNFINSLKPKQIRGNNMGKDYIGNVYY--EIPAD 144
F+ ++SL+ + + NN DYI NV Y +IPAD
Sbjct: 226 FSEAVDSLRERFVDNNN--SDYIFNVSYHKKIPAD 258
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 0.78
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 100 PYYFPLFVSVLGNL*NS*RLYATHF 26
P Y PLF S + NL S LY HF
Sbjct: 85 PAYHPLFFSQMYNLLRSTCLYCHHF 109
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 1.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 183 IVPSSCLSFTRPRVSRYFIIN 121
I+PSS +SF R +S+ +++N
Sbjct: 118 IIPSSDVSFIRDLISKNYVVN 138
>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 103
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 174 SSCLSFTRPRVSRYFIINIAYVVFSHIISPYLFRF*GIY 58
SS + + P +I I + +S + SPYLF++ ++
Sbjct: 66 SSSIGLSNPNKFSIYIY-IYFFFYSFLCSPYLFKYISLF 103
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +1
Query: 124 YYEIPADPRSGKRKATRWYDPAKGKDFQEP 213
+Y RSG++ W+ GKD +P
Sbjct: 19 HYFFQLQNRSGQQDLIEWFREKFGKDISQP 48
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 82 IRGNNMGKDYIGNVYYEIPADPRSGKRKATRWYDPAKG 195
+R + +G+D+ N++ + P GK+ T ++ +KG
Sbjct: 166 VRYDGIGEDFDPNIHEAVFQIPVEGKKPNTVFHCESKG 203
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 130 EIPADPRSGKRKATRWYDP 186
EIP+D SG + +W +P
Sbjct: 330 EIPSDITSGSPQPAKWSEP 348
>SPAC630.11 |vps55||vacuolar sorting protein Vps55
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 112 CSLFPYYFPLFVSVLGNL 59
C+LF ++PL ++ L NL
Sbjct: 25 CALFKNWYPLLIAPLPNL 42
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 139 QVFHNKHCLCSLFPYYFPLFVSVLGNL 59
Q+ + + LFP FP ++SV N+
Sbjct: 147 QIHPKDYTMNDLFPQSFPTWISVYRNV 173
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 147 RVSRYFIINIAYVVFSHIISPYLF 76
R+S ++I ++ H +SPY F
Sbjct: 1192 RISAFYIASLQKYFVKHGLSPYAF 1215
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 7 GSSGEYRSVWRIVFTNFINSLKPKQIRGN 93
GSSG R++ ++FT SLK K + N
Sbjct: 45 GSSGCDRTIGNLLFTLANASLKQKDPKSN 73
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 31 VWRIVFTNFINSLKPKQIRGNN-MGKDYIGNVY 126
+W ++F +FI + Q GN + D++ +
Sbjct: 3 IWILIFFSFIKLVSSLQYTGNGVLALDFVAKTF 35
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 112 CSLFPYYFPLFVSVL 68
CS+ P Y LF+S++
Sbjct: 538 CSILPSYIDLFISLM 552
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 1 ARGSSGEYRSVWRIVFTNFINSLKPKQIRGNNMGKD 108
A+G SGE ++ W I N+ + ++G+ G++
Sbjct: 205 AKGKSGENKNEWIINTPNWGTNTFSTPLKGDYQGQN 240
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 99 GKRLHRQCLL*NTC 140
GK+LH QC +TC
Sbjct: 275 GKKLHPQCFKCDTC 288
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 27 KCVAYSLYEFYK 62
KCV YSL EF K
Sbjct: 618 KCVNYSLMEFQK 629
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/54 (22%), Positives = 20/54 (37%)
Frame = +1
Query: 55 FINSLKPKQIRGNNMGKDYIGNVYYEIPADPRSGKRKATRWYDPAKGKDFQEPV 216
+ S P++ R N Y G+ Y + T YD + Q+P+
Sbjct: 293 YSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPTESYDKPAASEEQQPL 346
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 98 ILFPLICFGFREFIKFVKTIRHTLLYSPL 12
++FPL+CF F IR ++ + L
Sbjct: 722 VIFPLLCFTVISAYNFSTMIRSSMQFVSL 750
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 118 NVYYEIPADPRSGKRKATRWYDPAKGKDFQEPV 216
++Y+ D + K WYDP GK + PV
Sbjct: 228 SIYFGGDVDTSTVKVNRVNWYDPC-GKLAKVPV 259
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 46 FTNFINSLKPKQIRGNNMGKDYIGNVYYEIPAD 144
F FINSL + GN K Y+I D
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRD 107
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +1
Query: 43 VFTNFINSLKP--KQIRGNNMG 102
++TNF+NS +P Q++ MG
Sbjct: 63 LYTNFVNSFRPNINQLKAVYMG 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.137 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,060
Number of Sequences: 5004
Number of extensions: 19013
Number of successful extensions: 50
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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