Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P17
         (220 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY039756-1|AAK83460.1|  154|Homo sapiens C9orf19 protein.              28   6.2  
AL158830-2|CAH73678.1|  154|Homo sapiens chromosome 9 open readi...    28   6.2  
AK075091-1|BAC11395.1|  154|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AK074488-1|BAC11019.1|  122|Homo sapiens protein ( Homo sapiens ...    28   6.2  
AJ011129-1|CAC12812.1|  154|Homo sapiens 17kD protein protein.         28   6.2  

>AY039756-1|AAK83460.1|  154|Homo sapiens C9orf19 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 RSGKRKATRWYDPAKGKDFQEP 213
           ++GK  A RWY   K  +FQ+P
Sbjct: 74  QTGKEVADRWYSEIKNYNFQQP 95


>AL158830-2|CAH73678.1|  154|Homo sapiens chromosome 9 open reading
           frame 19 protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 RSGKRKATRWYDPAKGKDFQEP 213
           ++GK  A RWY   K  +FQ+P
Sbjct: 74  QTGKEVADRWYSEIKNYNFQQP 95


>AK075091-1|BAC11395.1|  154|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90610 fis, clone PLACE1001795. ).
          Length = 154

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 RSGKRKATRWYDPAKGKDFQEP 213
           ++GK  A RWY   K  +FQ+P
Sbjct: 74  QTGKEVADRWYSEIKNYNFQQP 95


>AK074488-1|BAC11019.1|  122|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90007 fis, clone HEMBA1000128, weakly similar to
           PATHOGENESIS-RELATED PROTEIN 1 PRECURSOR. ).
          Length = 122

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 RSGKRKATRWYDPAKGKDFQEP 213
           ++GK  A RWY   K  +FQ+P
Sbjct: 74  QTGKEVADRWYSEIKNYNFQQP 95


>AJ011129-1|CAC12812.1|  154|Homo sapiens 17kD protein protein.
          Length = 154

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 148 RSGKRKATRWYDPAKGKDFQEP 213
           ++GK  A RWY   K  +FQ+P
Sbjct: 74  QTGKEVADRWYSEIKNYNFQQP 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.316    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,007,740
Number of Sequences: 237096
Number of extensions: 630386
Number of successful extensions: 1149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)