Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P17
(220 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical p... 28 0.78
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 27 2.4
AC024090-8|AAF35422.2| 649|Caenorhabditis elegans Hypothetical ... 26 3.2
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 25 7.3
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p... 25 9.6
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z81454-1|CAB03803.1| 320|Caenorhabditis elegans Hypothetical pr... 25 9.6
U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical p... 25 9.6
>Z93383-11|CAI58635.1| 279|Caenorhabditis elegans Hypothetical
protein F54B8.16 protein.
Length = 279
Score = 28.3 bits (60), Expect = 0.78
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 201 ILTFCRIVPSSCLSFTRPRVSRYFIINIAY 112
+L +C+I C SFT + YF++ + Y
Sbjct: 43 LLIYCKIAADICYSFTVSIMKSYFLVILCY 72
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -3
Query: 68 REFIKFVKTIRHTLLYSPLDP 6
R+F+K V+T R +L+SP++P
Sbjct: 157 RKFLKTVRTGRAEILHSPIEP 177
>AC024090-8|AAF35422.2| 649|Caenorhabditis elegans Hypothetical
protein C52E2.8 protein.
Length = 649
Score = 26.2 bits (55), Expect = 3.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 10 SSGEYRSVWRIVFTNFINSLKP 75
+SG Y+ W+I+ NF+++ +P
Sbjct: 299 TSGNYKVAWKILDHNFLSNARP 320
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 92 FPLICFGFREFIKFVKTIRHTLLYSPLD 9
FP EF+K+ +T +H + SP++
Sbjct: 289 FPYEQLNLSEFLKYAQTSKHFFILSPVN 316
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 92 FPLICFGFREFIKFVKTIRHTLLYSPLD 9
FP EF+K+ +T +H + SP++
Sbjct: 289 FPYEQLNLSEFLKYAQTSKHFFILSPVN 316
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 92 FPLICFGFREFIKFVKTIRHTLLYSPLD 9
FP EF+K+ +T +H + SP++
Sbjct: 289 FPYEQLNLSEFLKYAQTSKHFFILSPVN 316
>Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical
protein DH11.2 protein.
Length = 411
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 80 CFGFREFIKFVKTIRHTL 27
C GFRE ++F+K I + L
Sbjct: 201 CAGFRELLRFLKEISYKL 218
>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
protein Y41E3.9 protein.
Length = 1440
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 143 TLGLVKERQLDGTILQKVR 199
T+GLVK R +DG I+ R
Sbjct: 1413 TVGLVKSRSIDGDIIMDQR 1431
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 144 VSRYFIINIAYVVFSHII-SPYLFRF 70
+SR+++ + +Y VF H++ SP F+F
Sbjct: 923 LSRFYLRSHSYYVFQHLLGSPTPFKF 948
>Z81454-1|CAB03803.1| 320|Caenorhabditis elegans Hypothetical
protein B0391.3 protein.
Length = 320
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 107 SFPILFPLICFGFREFIKFVKTIRHTL-LYSPLDP 6
S PILFP++ G+ +KF I +T+ +Y +DP
Sbjct: 251 SIPILFPILNLGYD--VKF-SFISYTIAIYPAIDP 282
>U64844-11|AAB18311.1| 482|Caenorhabditis elegans Hypothetical
protein T22F3.8 protein.
Length = 482
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -2
Query: 141 SRYFIINIAYVVFSHIISPYLFRF*GIYKIRKDYTP 34
S Y IIN ++ H S G + DYTP
Sbjct: 56 SNYLIINFTFICMKHDFSDGFTEINGTRQSIYDYTP 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.137 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,490,909
Number of Sequences: 27780
Number of extensions: 102737
Number of successful extensions: 291
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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