Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P16
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 271 2e-74
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 149 1e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 142 2e-35
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 107 6e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 79 3e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 75 6e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 4e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 1e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.039
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 29 0.27
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 1.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 1.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 1.9
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 25 3.4
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 4.5
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 4.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 5.9
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 25 5.9
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 5.9
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 7.6
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 7.8
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 24 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 271 bits (665), Expect = 2e-74
Identities = 124/133 (93%), Positives = 128/133 (96%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 184
+DAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDME
Sbjct: 24 DDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 83
Query: 185 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 364
KIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLY
Sbjct: 84 KIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLY 143
Query: 365 ASGRTTGIVLDSG 403
ASGRTTGIVLDSG
Sbjct: 144 ASGRTTGIVLDSG 156
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 149 bits (362), Expect = 1e-37
Identities = 68/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 184
+D P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME
Sbjct: 28 DDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDME 87
Query: 185 KIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 361
+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+L
Sbjct: 88 EIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLAL 147
Query: 362 YASGRTTGIVLDSG 403
YAS RTTGIVL+ G
Sbjct: 148 YASARTTGIVLECG 161
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 142 bits (343), Expect = 2e-35
Identities = 66/135 (48%), Positives = 97/135 (71%), Gaps = 2/135 (1%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 178
++ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+GI+ ++++
Sbjct: 22 DNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEE 81
Query: 179 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 358
M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLS
Sbjct: 82 MNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLS 141
Query: 359 LYASGRTTGIVLDSG 403
LYA G ++G+V+DSG
Sbjct: 142 LYAQGLSSGVVVDSG 156
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 107 bits (257), Expect = 6e-25
Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 9/115 (7%)
Frame = +2
Query: 86 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 262
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 263 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSG 403
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSG
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 79.0 bits (186), Expect = 3e-16
Identities = 46/133 (34%), Positives = 68/133 (51%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDME 184
ED P+ V PS G + G + Y+ +S G + +K I +G V NWD
Sbjct: 30 EDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVTV 81
Query: 185 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 364
+W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141
Query: 365 ASGRTTGIVLDSG 403
ASG+ T ++D G
Sbjct: 142 ASGKGTACLVDIG 154
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 74.5 bits (175), Expect = 6e-15
Identities = 42/136 (30%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDM 181
E P+ VF ++V R R + + + + VG++ + G ++ + P E +++NWD M
Sbjct: 43 EKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLM 98
Query: 182 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 361
E++ +TF +L + EHP+ +TE NP R MT+++FE +N P++ I + S
Sbjct: 99 EQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSF 157
Query: 362 YASGR--TTGIVLDSG 403
Y + + ++GIVL+ G
Sbjct: 158 YHNTKPSSSGIVLNLG 173
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.7 bits (168), Expect = 4e-14
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Frame = +2
Query: 5 EDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDD 178
E++P + PS + GV + ++ YV DE Q I + +K +GI+ +W+
Sbjct: 29 EESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWES 82
Query: 179 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 358
W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV
Sbjct: 83 TLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCV 142
Query: 359 LYASGRTTGIVLDSG 403
+A+ ++T +++D G
Sbjct: 143 AFANSKSTALIVDIG 157
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.4 bits (115), Expect = 1e-07
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +2
Query: 143 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 310
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 311 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 403
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.039
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 203 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 346
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 29.1 bits (62), Expect = 0.27
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 14 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 145
PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 1.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 245 LLTEAPLNPKANREKMTQIMFETFN 319
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 405 SPESST-IPVVRPDAYSESTAWIATYMAGVLKVSNIICVIFS 283
+P+S+ + +V D S+S Y+A +K +N+IC+++S
Sbjct: 44 NPDSNDDVSLVLVDTQSDSNE--REYLAAEIKKANVICLVYS 83
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 198 TPSTMSCV*LPRSTQSCSPKLPSTPKPTE 284
TPS S P S+ + SP PSTP T+
Sbjct: 405 TPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 3.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 298 LCHLLSVGFGVEGSFGEQDWVLLGSYTQLIVEGVMP-DLLHIVPVGDDAVFDGVFECEDT 122
L ++ VG +G+F W +LGS M D +VPV D + F + E
Sbjct: 96 LVEVVDVGDQFKGTFSPGQWAILGSVNLGSWRTEMNIDGRSLVPV-DKSAFPSIAEAATL 154
Query: 121 SL----ALCLITYV 92
S+ A CL+ +V
Sbjct: 155 SVNPCTAYCLLQHV 168
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 124 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 234
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 239 GAPRELHAAHCRRCDARSSP 180
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 62 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 148
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 5.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 115 QERYPHTQIPHRTRHRH 165
Q +PHT+ PH H H
Sbjct: 167 QHHHPHTRPPHHPPHPH 183
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 189 SGITPSTMSCV*LPRSTQSCSPKLPSTPKPT 281
S T S +S + R ++S LPSTP PT
Sbjct: 399 SSTTCSNLSSPHIKRKSRSPPQSLPSTPFPT 429
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 250 HRXXXXXXXXXREDDTDYVRDLQHTRHVRSYPGRALTV 363
H +ED+T D+ R++R +PG TV
Sbjct: 78 HHSNSLIHASTKEDNTVRYLDVVTNRYLRYFPGHKQTV 115
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 7.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 125 ILTLKYPIEHGIVTN 169
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 7.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 164 TNWDDMEKIWHHTFYNELRVAPEEHP 241
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +2
Query: 2 HEDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 121
H + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 329 HSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -3
Query: 334 VHGGCVEGLEHNLCHLLSVGFGVEGSFGEQDWVLL 230
+ G VEG L LS+ FG+ +WV L
Sbjct: 324 IRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVAL 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,786
Number of Sequences: 5004
Number of extensions: 39204
Number of successful extensions: 112
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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