Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P15
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 30 0.084
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 30 0.084
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 28 0.26
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 1.4
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 1.8
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 1.8
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 3.1
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 24 5.5
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.5
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 23 7.3
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 23 7.3
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 23 7.3
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 23 7.3
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 23 9.6
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 23 9.6
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 9.6
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 23 9.6
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 23 9.6
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 29.9 bits (64), Expect = 0.084
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 246 HSAGRYAHKRFRKAQC 293
H+AGR+ KRFRKA+C
Sbjct: 50 HTAGRFQTKRFRKARC 65
Score = 28.3 bits (60), Expect = 0.26
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISV 217
IKLF ++ V+V D+SL DYI++
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITI 42
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 29.9 bits (64), Expect = 0.084
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 246 HSAGRYAHKRFRKAQC 293
H+AGR+ KRFRKA+C
Sbjct: 50 HTAGRFQTKRFRKARC 65
Score = 28.3 bits (60), Expect = 0.26
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISV 217
IKLF ++ V+V D+SL DYI++
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITI 42
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 28.3 bits (60), Expect = 0.26
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 202 LQRHVRYLNVITTPSPKKFDFGNISRLW 119
LQ+H++YL + P P F + SR W
Sbjct: 31 LQKHLKYLTKMLDPLPSPFTVLDASRAW 58
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 1.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 101 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYL 241
V+NM + +P I KL + + + ++ L ++ ++EKYA+YL
Sbjct: 854 VENMNIKEPTFI---KLMKKVNILESRLLSNPLHNFSELEEKYAEYL 897
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 1.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 285 LYGIVCERTCQQNAGKYFAYFSFTDI*SCKDMSDT*TS*QLHRPK 151
+YG+ R A F Y ++T C D + TS L +PK
Sbjct: 239 IYGVASGRANLSEASLMFLYIAYTVYMVCTDFGNPNTS-SLEKPK 282
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 72 KKSPTRAAWLWTTCHYHSRLIFPKSNFLGDGVVMTFKYRTCLCRIIY 212
K +P R LW +CH++ +I+ ++ ++TF + +IY
Sbjct: 256 KVAPGRYECLWLSCHFYYSIIYLLNSMF---YLLTFYSLRAITMLIY 299
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 3.1
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 128 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 244
ADI + FGR ++++++ + I+V+EKYAK P
Sbjct: 9 ADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQP 43
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 236 ILHTSLLPIYNPAKTCPIL 180
+LH SL P++N A C L
Sbjct: 226 LLHWSLFPLFNHANGCDTL 244
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 205 ILQRHVRYLNVITTPSPKKFDFGNISRL 122
IL++ + +I S +KFDF N R+
Sbjct: 3 ILEKKNIFFKIIHIKSSRKFDFSNAIRI 30
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++ + PVL H +H +F
Sbjct: 343 IILNHPGQISAGYSPVLDCHTAHIACKF 370
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +2
Query: 185 SDMSLQDYISVKEKYAKYLP 244
SDM ++ + ++K +Y+K +P
Sbjct: 706 SDMGMEKFFNIKCRYSKLVP 725
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 67 PVLLSHISHFYSQFTNYNLALV 2
P+ +S ISHFY +YN ++
Sbjct: 124 PLHISVISHFYPCLQSYNTDVI 145
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 214 RYIILQRHVRYLNVITTPSPKKFDFGNISRLW 119
+YI+ + V+Y+N+ + F ISRL+
Sbjct: 88 KYIVKENKVKYVNIERDSMMRLNGFPGISRLF 119
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 159 DGVVMTFKYRTCLCRIIYR 215
DG+ +FKY C ++IY+
Sbjct: 943 DGLKPSFKYHPCFEQLIYQ 961
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +2
Query: 53 AEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWS 166
+ E W E+ ++ + P P+ PE+ F W+
Sbjct: 213 SSEGWPSELRLTSS-IIQTLGTPNPSMWPELSTFPDWN 249
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 250 ECW*IFCILLFYRYIILQRHVRYLNVITTPSPK 152
EC C L+F +Y + + R L +I + S K
Sbjct: 52 ECCASLCSLIFSKYYLHYKTFRILTIIQSWSDK 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,427
Number of Sequences: 5004
Number of extensions: 24840
Number of successful extensions: 82
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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