Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P15
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 48 1e-06
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 43 4e-05
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 32 0.072
03_01_0548 + 4099386-4099847,4100435-4101316 28 1.2
03_01_0547 + 4093196-4093657,4094267-4095148 28 1.2
03_01_0544 + 4082528-4082989,4083585-4084466 28 1.2
03_01_0543 + 4076981-4077442,4078145-4079026 28 1.2
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 27 2.1
10_02_0110 - 5371536-5372882 27 3.6
10_08_0835 - 20916364-20916462,20916503-20916549,20916750-209168... 26 4.7
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 26 4.7
07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501 26 4.7
05_03_0329 - 12473778-12473956,12474190-12474250 26 4.7
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 26 4.7
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 26 6.3
08_01_0474 - 4173245-4174195 26 6.3
08_02_1070 - 24106152-24106967 25 8.3
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 25 8.3
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122... 25 8.3
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789... 25 8.3
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +2
Query: 140 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLP 244
E+KLF RWS DVQV+D+SL DY++V K+A YLP
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLP 45
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +3
Query: 246 HSAGRYAHKRFRKAQCPI 299
H+AGRY+ KRFRKAQCPI
Sbjct: 46 HTAGRYSAKRFRKAQCPI 63
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/35 (57%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +2
Query: 143 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLP 244
+KLF WS DVQV+D+SL DY++V K+A YLP
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLP 46
Score = 37.5 bits (83), Expect = 0.002
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +3
Query: 246 HSAGRYAHKRFRKAQCPI 299
H+AGRY+ KRFRKAQCP+
Sbjct: 47 HTAGRYSAKRFRKAQCPL 64
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 32.3 bits (70), Expect = 0.072
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 71 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPAF 250
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIPLC 271
Query: 251 C 253
C
Sbjct: 272 C 272
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 109 VVHNHAARVGDFFGPVLLSHISHFYSQF 26
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 197 LQDYISVKEKYAKYLPAFCWQVRSQ 271
++D ++V K LPA CW VR Q
Sbjct: 549 IRDKVAVINHIKKLLPAACWAVRPQ 573
>10_02_0110 - 5371536-5372882
Length = 448
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 65 WTEEVADAGGMVVDNMPLPQPADIPEIKL 151
W+ + DA ++ ++PLPQP +P + L
Sbjct: 81 WSRVITDAAVLLCRSLPLPQPV-LPRLAL 108
>10_08_0835 -
20916364-20916462,20916503-20916549,20916750-20916864,
20916933-20917011,20917365-20917518,20917660-20917739,
20918170-20918401,20918755-20918860
Length = 303
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 250 ECW*IFCI--LLFYRYIILQRHVRYLNVITTP 161
+ W I C+ L+ Y +LQRHV + ++ +P
Sbjct: 271 QVWNILCVSNLMVLLYRVLQRHVMWHYILNSP 302
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 197 LQDYISVKEKYAKYLPA 247
LQD+ V E YAKY PA
Sbjct: 122 LQDFKKVNEIYAKYFPA 138
>07_03_0220 + 15323423-15324022,15324118-15324258,15324391-15324501
Length = 283
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 71 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSD 190
E +AGG V + P PA + +I GRWS Y +++
Sbjct: 4 EADVEAGG--VRDYEDPPPAPLVDIDELGRWSLYRAVIAE 41
>05_03_0329 - 12473778-12473956,12474190-12474250
Length = 79
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 96 WLWTTCHYHSRLIFPKSNFLGDGVVMTFKYRTCL 197
W W C+ + +F + DG V F+ R C+
Sbjct: 25 WNWIICYSSASSVFAALDKDNDGKVSAFELRGCM 58
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 GEVIIRKLRIKV*NMAEENWTEEVADAGGMVVDNMP-LPQPADIPEIKLFGRWSCYDVQV 184
GEV I K NM E E+ M N+P L P + +++FG S VQ
Sbjct: 1106 GEVFINLSPTKCWNMVRERLNMEIRRQLNMGKSNLPTLQPPGSVDGLEMFGLLSPPIVQA 1165
Query: 185 SDMSLQDYI 211
+D+I
Sbjct: 1166 IWARDRDHI 1174
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +2
Query: 8 GEVIIRKLRIKV*NMAEENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVS 187
G + +++ +K ++W + VADAGG++ + + Q P L+ + V
Sbjct: 1651 GILSLQQTAVKALESISQSWPKAVADAGGILELSKVIVQDDPQPSQALWDSAALVLCNVL 1710
Query: 188 DMSLQDYISV 217
S +Y+ V
Sbjct: 1711 RYSSDNYVQV 1720
>08_01_0474 - 4173245-4174195
Length = 316
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 68 TEEVADAGGMVVDNMPLPQPADIPEIKLFGR 160
+EE A A D+M P DIPE+ F R
Sbjct: 158 SEEEAAAAAAAFDDMGTPAARDIPEVTGFVR 188
>08_02_1070 - 24106152-24106967
Length = 271
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +2
Query: 5 EGEVIIRKLRIKV*NMAEE-NWTEEVADAGGMVVDNMPLPQ---PADIP 139
E E + LR++ N AEE +W E + +GG +D P P+ AD+P
Sbjct: 102 EEEEGVADLRLEASNAAEEFDWEEVASPSGGAGMD-QPEPEWEVLADVP 149
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 25.4 bits (53), Expect = 8.3
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +2
Query: 2 HEGEVIIRKLRIKV*NMAEENWTE--EVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYD 175
+EG I+ +RI V EE W + VD PL Q L G W Y+
Sbjct: 346 NEGGANIQIVRIAV---YEEKWVSPAHIHVEDDTPVDVKPLSQRKRTKPSDLTGSWKVYE 402
Query: 176 VQVSDMSLQDYISVKEKYAKYLPAFCWQVRSQTIP*SSV 292
V + + ++ + E A ++ V+ +++P SSV
Sbjct: 403 VSATPIFSEERQEI-EGGALFVYLCMETVKKRSLPESSV 440
>02_01_0179 -
1227573-1227803,1227916-1228138,1228159-1228185,
1228519-1228651,1228748-1228865,1229357-1229451,
1229886-1230048
Length = 329
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 125 PADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPAFCWQV 262
P E +L ++ +D +SD ++ S+ KY PA W +
Sbjct: 280 PKTSKEERLQENFAVFDFAISDEDMEKMRSIDRKYRTNQPAKFWGI 325
>01_01_0998 -
7894254-7894515,7895133-7895270,7896049-7896246,
7896334-7896786,7896877-7897098,7898100-7898227,
7899325-7899432
Length = 502
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 106 VHNHAARVGDFFGPVLLSHISHFYSQFTNYNLAL 5
++N + +G F G L S +S +QF N L L
Sbjct: 443 INNFGSTLGSFLGAALASALSISSAQFDNLALGL 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,010
Number of Sequences: 37544
Number of extensions: 159613
Number of successful extensions: 483
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -