Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P15
(301 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 58 2e-09
U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical pr... 29 0.82
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 28 1.1
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 28 1.1
Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z93386-2|CAB07647.1| 387|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z74036-3|CAA98488.1| 517|Caenorhabditis elegans Hypothetical pr... 25 7.6
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 25 7.6
AF036694-8|AAB88346.2| 607|Caenorhabditis elegans Hypothetical ... 25 7.6
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/62 (50%), Positives = 37/62 (59%)
Frame = +2
Query: 59 ENWTEEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKY 238
+NW E +V D P + PE+ LFG+WS V VSD+SL DYI VKEK AKY
Sbjct: 3 DNWGSE-----NVVADAAPA---TEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKY 54
Query: 239 LP 244
LP
Sbjct: 55 LP 56
Score = 33.1 bits (72), Expect = 0.038
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 246 HSAGRYAHKRFRKAQCPI 299
HSAGR+ +RFRKA CPI
Sbjct: 57 HSAGRFQVRRFRKAACPI 74
>U58750-3|AAB00643.2| 350|Caenorhabditis elegans Hypothetical
protein F55G1.6 protein.
Length = 350
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 144 SNFLGDGVVMTFKYRTCLCRIIY 212
SN+L DG V+ +K + C CR ++
Sbjct: 124 SNYLEDGDVLGYKLKPCFCRKLF 146
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 60 RTGPKKSPTRAAWLWTTCHYHS 125
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 60 RTGPKKSPTRAAWLWTTCHYHS 125
+T P K +R W+ T C +HS
Sbjct: 254 KTTPSKKSSRVPWVCTVCEFHS 275
>Z68751-3|CAA92973.1| 760|Caenorhabditis elegans Hypothetical
protein T05E11.3 protein.
Length = 760
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 79 DFFGPVLLSHISHFYSQFTNYNLAL 5
DF P L ++ H YSQF N+++ L
Sbjct: 245 DFLEPDTLKNLVHKYSQFINFDIFL 269
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -1
Query: 136 NISRLW*WHVVHNHAARVGDFFGPVLLSHISHF 38
+ S W WH+ H DFFG S S F
Sbjct: 42 SFSGFWHWHLTMQHCNNENDFFGSFNSSSNSPF 74
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -2
Query: 261 TCQQNAGKYFAYFSFTDI*SCKDMSDT*TS*QLHRPKSLISGISAGCGNG 112
TCQ F F T C D +D Q +P++ G C NG
Sbjct: 930 TCQSYLANAFQGFCCTANSVCPDNADYLIDDQSQQPRACTQGTFVSCPNG 979
>Z93386-2|CAB07647.1| 387|Caenorhabditis elegans Hypothetical
protein R11H6.3 protein.
Length = 387
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 296 RALSFTESFVSVPASRMLVNILHTSLLPIYNPAKTCPILERH-NNSIAQ 153
RA SF++ P+S ++ +S L I + A CP + + NNS+ +
Sbjct: 294 RAAPRRGSFLNSPSSSRRGSMCTSSQLSINDEAPKCPFMSKSANNSVTR 342
>Z74036-3|CAA98488.1| 517|Caenorhabditis elegans Hypothetical
protein F55C10.4 protein.
Length = 517
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 72 KKSPTRAAWLWTTCHYHSRLIFPKSNFLGDGVVM 173
K T A+ +T HS +PKS LG+ V+
Sbjct: 38 KNHKTIEAYQYTHTFIHSAYYYPKSKSLGENAVV 71
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 90 AAWLWTTCHYHS 125
+A LWT+CHY+S
Sbjct: 966 SAALWTSCHYYS 977
>AF036694-8|AAB88346.2| 607|Caenorhabditis elegans Hypothetical
protein CD4.8 protein.
Length = 607
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 101 VDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISV 217
VD P P+PAD +L R S Y++ + D S Q+Y V
Sbjct: 342 VDGYPKPEPADFDFEELLNRDSTYNLLI-DHS-QEYKEV 378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,984,789
Number of Sequences: 27780
Number of extensions: 138765
Number of successful extensions: 328
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -