Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P14
(320 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 88 3e-19
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 27 0.70
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 1.2
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 2.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 2.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 2.8
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 2.8
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 23 8.7
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone... 23 8.7
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 23 8.7
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 88.2 bits (209), Expect = 3e-19
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +3
Query: 57 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 218
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.1 bits (57), Expect = 0.70
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 9 SCFPLLGLEKTN*FYIMGHANIWYSHPRRY 98
S + + G +K N FY + N WY RY
Sbjct: 230 SSWDIYGFKKANQFYTVDQYNTWYGPYSRY 259
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -1
Query: 296 FIYLVLIEMKQFFAYIKNLLNLSLVQLFKSNIMRILSEALPAD 168
++Y L ++ F + NL L Q+F ++ + +A+P+D
Sbjct: 492 WVYQALFLIQVFELFTSNLKQHRLAQMFHPVLIEAMRQAIPSD 534
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 2.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 299 GFIYLVLIEMKQFFAYIKNLLNLSLVQLF 213
GF LVL+ M ++ +I N+L+ +L+ LF
Sbjct: 102 GFFLLVLVRMTDYWIFI-NILHNALLVLF 129
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 110 PFMPSLLKQTWSHS*IWLEYLQ 175
PF S L++TW++ W E LQ
Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -1
Query: 239 LNLSLVQLFKSNIMRILSEALPADIQAIFTNETMSV 132
L +SL+Q+F+S++ + + E++ D+ + E S+
Sbjct: 1593 LKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESL 1628
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 2.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 99 GQGSRSCRACSNRHGLIRKYGLNICRQC 182
G GS A N+ G + +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.4 bits (48), Expect = 8.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 18 PLLGLEKTN*FYIMGHANIWYSHPRRYGQGSRSCRA-CSNRHGLIRKYGLNI 170
P+L ++ F I W + R GQGS +A S+ L +K LN+
Sbjct: 128 PILPIDSAGGFLIEWWNVFWDIYNARRGQGSEPAKAYMSHISNLRKKSRLNL 179
>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 195
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 252 VSEELFHFYENQINEPLKKKKKK 320
V +EL Y+N +N+P K+K
Sbjct: 117 VDKELSPMYDNYVNKPSNDPKQK 139
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 172 QIFKPYLRMRPCLFEQARHEREPCP 98
Q+FKP +++R L + + REP P
Sbjct: 98 QVFKPSIKLRSVLEQILQLLREPNP 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,025
Number of Sequences: 5004
Number of extensions: 27621
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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