Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P14
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   102   5e-23
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    32   0.11 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    32   0.11 
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   1.3  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   1.3  
Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   3.0  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   3.0  
Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    26   5.3  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical pr...    25   9.2  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  102 bits (245), Expect = 5e-23
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +3

Query: 57  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 224
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 117 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 218
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 117 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 218
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 4   EDRVSLFWVSRKQTNFTSW---VTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISA 174
           +D V+L    ++Q   +     V  I+ I T + TG++  HA PA T +V  + +   ++
Sbjct: 303 QDNVTLLMALQQQQRRSQQLQHVINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTS 362

Query: 175 GSASESMRMILD 210
              S S  + +D
Sbjct: 363 NQESSSKTVSID 374


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 4   EDRVSLFWVSRKQTNFTSW---VTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISA 174
           +D V+L    ++Q   +     V  I+ I T + TG++  HA PA T +V  + +   ++
Sbjct: 303 QDNVTLLMALQQQQRRSQQLQHVINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTS 362

Query: 175 GSASESMRMILD 210
              S S  + +D
Sbjct: 363 NQESSSKTVSID 374


>Z81592-4|CAB04728.1|  436|Caenorhabditis elegans Hypothetical
           protein T16G1.4 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 269 KQFFAYIKNLLNL-SLVQLFKSNIMRILSEALPADIQAIFTNET 141
           K+F   I + L++  L++  K +   ++++A  AD+ A+F NE+
Sbjct: 73  KKFILKITSCLHVVGLLEKLKESEQNVINDANEADLMALFENES 116


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 269 KQFFAYIKNLLNLSLVQLFKSNIMR 195
           K  F Y KN +NLS   +  SNI+R
Sbjct: 645 KNIFKYSKNNINLSYSNIVASNILR 669


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 269 KQFFAYIKNLLNLSLVQLFKSNIMR 195
           K  F Y KN +NLS   +  SNI+R
Sbjct: 645 KNIFKYSKNNINLSYSNIVASNILR 669


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 269 KQFFAYIKNLLNLSLVQLFKSNIMR 195
           K  F Y KN +NLS   +  SNI+R
Sbjct: 691 KNIFKYSKNNINLSYSNIVASNILR 715


>Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical
           protein C07E3.3 protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 79  IHTHVDTGRVPVHAEPAQT 135
           +H H + GR PV+  PAQT
Sbjct: 252 LHRHPEVGRHPVYVLPAQT 270


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = -1

Query: 296 FIYLVLIEMKQFFAYIKNLLNLSLVQLFKSNIMRI 192
           F+YL+ + ++Q+F++ K L+NL+ + + +SN   I
Sbjct: 92  FVYLITVTVRQYFSFQK-LVNLN-IGMVESNFPSI 124


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 68  KYLVFTPT*IRAGFPFMPSLLKQTW 142
           KYL+ TP  +R+G P +  + +QTW
Sbjct: 237 KYLM-TPAAVRSGKPLIKLIQRQTW 260


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 68  KYLVFTPT*IRAGFPFMPSLLKQTW 142
           KYL+ TP  +R+G P +  + +QTW
Sbjct: 525 KYLM-TPAAVRSGKPLIKLIQRQTW 548


>Z82282-8|CAB05278.1|  575|Caenorhabditis elegans Hypothetical
           protein T07G12.11 protein.
          Length = 575

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -2

Query: 178 CLQIFKPYLRM-RPCLFEQAR-HEREPCPYLRGCEYQIFA*PMM 53
           C QI    LR  +  L + A  HE E C   R CEY     P M
Sbjct: 447 CKQILSWKLRYGKQRLLDHAMTHENEKCLVCRTCEYSCSTHPQM 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,583,725
Number of Sequences: 27780
Number of extensions: 151035
Number of successful extensions: 354
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)