Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P13
         (82 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    19   7.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    18   9.5  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 1   ARGIYSHSIQKIT 39
           A+G+Y+HS   +T
Sbjct: 91  AQGLYNHSTVPLT 103


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 71  YSLFIIILNKFVIFCI 24
           + +F + L+ FV+ CI
Sbjct: 117 FRMFGLYLSSFVLVCI 132


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 15  FSFNTKNYEFI*YNN 59
           +++N  NY    YNN
Sbjct: 331 YNYNNNNYNNNNYNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,019
Number of Sequences: 438
Number of extensions: 244
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 8
effective length of database: 142,839
effective search space used:  2571102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)