Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P12
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   2.1  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.9  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    24   8.5  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 236 GQWPWQVALYETKITDSKFMCGGTLVTHRHIITAAHCTTHE 358
           GQ   QV +++   TD+ F    T + H+H +++  C   E
Sbjct: 34  GQCSGQVMVFDVS-TDNHFTLIQTFIAHKHSVSSIVCLPFE 73


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 45  DRRRVSRKTGHLRQHSRLNHVNRRHQFNHQVHPHQQ 152
           DRRR SRK    +  +     +RRH   H+VH + Q
Sbjct: 58  DRRRQSRKKKSTQIQASDEMKHRRHHV-HKVHHYSQ 92


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 304 TSAHKLTICNFGFIESDLPRPLS 236
           TS+ +L I NFGF+     RP++
Sbjct: 444 TSSGELVIHNFGFLSFSASRPMN 466


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 204 GLSLITLPHCISDPLTVIVGVDA 136
           GL++ T  H  +   TV+VGVDA
Sbjct: 30  GLTVATEHHPYAQTATVLVGVDA 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,537
Number of Sequences: 5004
Number of extensions: 20655
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)