Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P11
(293 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 72 6e-14
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 72 6e-14
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 59 6e-10
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 37 0.003
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 37 0.003
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 31 0.11
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 31 0.11
AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical ... 31 0.14
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 30 0.33
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 29 0.44
AC025727-6|AAY55898.1| 558|Caenorhabditis elegans Hypothetical ... 29 0.44
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 29 0.44
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical pr... 28 1.3
AF000265-5|AAK68197.1| 331|Caenorhabditis elegans Hypothetical ... 28 1.3
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical pr... 27 1.8
AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeri... 27 1.8
AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical ... 27 1.8
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ... 27 1.8
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein. 27 2.3
U58757-4|AAC47922.3| 580|Caenorhabditis elegans Hypothetical pr... 26 4.1
U29154-4|AAA68420.2| 288|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z75711-4|CAB00030.1| 134|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 25 9.4
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 25 9.4
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 25 9.4
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 72.1 bits (169), Expect = 6e-14
Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = +2
Query: 149 IYDIKSGTQTLA-ADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I++++ Q+ A+L GH GPVW+V+WAHPKYG LLAS SYD+KVIIW
Sbjct: 39 IFEVRPNGQSYPMAELVGHSGPVWKVSWAHPKYGGLLASASYDKKVIIW 87
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = +3
Query: 33 MITVLNTIDTGHEDMIHDAELDYYGLRLATCSS 131
M TV IDT H D IHDA+L+ YG RLATC S
Sbjct: 1 MTTVRQRIDTQHRDAIHDAQLNIYGSRLATCGS 33
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 72.1 bits (169), Expect = 6e-14
Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = +2
Query: 149 IYDIKSGTQTLA-ADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I++++ Q+ A+L GH GPVW+V+WAHPKYG LLAS SYD+KVIIW
Sbjct: 39 IFEVRPNGQSYPMAELVGHSGPVWKVSWAHPKYGGLLASASYDKKVIIW 87
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = +3
Query: 33 MITVLNTIDTGHEDMIHDAELDYYGLRLATCSS 131
M TV IDT H D IHDA+L+ YG RLATC S
Sbjct: 1 MTTVRQRIDTQHRDAIHDAQLNIYGSRLATCGS 33
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 58.8 bits (136), Expect = 6e-10
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +2
Query: 149 IYDIK-SGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I+D K G +A K H G VW+V WAHP++G ++A+CSYDR ++IW
Sbjct: 43 IWDRKPDGNWRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIW 91
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 66 HEDMIHDAELDYYGLRLATCSS 131
H D+IH D +G R+ATC+S
Sbjct: 16 HRDLIHCVSFDPHGRRMATCAS 37
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
++D+ G Q LKGH V+ VAW+H G L AS D+ VI+W
Sbjct: 44 LFDVNEGGQMQT--LKGHKDLVYTVAWSH--NGELFASGGADKLVILW 87
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
++D+ G Q LKGH V+ VAW+H G L AS D+ VI+W
Sbjct: 44 LFDVNEGGQMQT--LKGHKDLVYTVAWSH--NGELFASGGADKLVILW 87
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 185 ADLKGHFGPVWQVAWAHPKYGNLLASCSYD 274
A L+GH GPV+QVAW+ LL S S D
Sbjct: 396 ASLRGHVGPVYQVAWSAD--SRLLVSGSAD 423
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGN----LLASCSYDRKVIIW 292
I++ K+G Q + LK H + +AW P + + LLASC D + IW
Sbjct: 173 IWNAKTGEQ-IGKTLKRHKQWITSLAW-QPMHKDPTCRLLASCGKDGNIFIW 222
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
++++K T++L DL GH V+ V W+ P+ G + S D+ + +W
Sbjct: 428 VFELK--TKSLYYDLPGHGDEVFTVDWS-PE-GTKVVSGGKDKVLKLW 471
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 149 IYDIKSGTQTL--AADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
++ +K G Q A L GH V +AW+ + G LLASCS D + +W
Sbjct: 255 LWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETG-LLASCSADGSIKLW 303
>AL110490-1|CAB54439.1| 674|Caenorhabditis elegans Hypothetical
protein Y48B6A.1 protein.
Length = 674
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 155 DIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
D++ TLA ++GH G V + P+ G LLAS D V IW
Sbjct: 328 DLRPFPTTLAFYMRGHTGQVRAIT-VEPERGELLASGGEDGTVRIW 372
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 191 LKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
LK H ++QV+++ P Y +LAS D +VI+W
Sbjct: 304 LKHHNDEIFQVSFS-PHYETVLASSGSDDRVIVW 336
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 191 LKGHFGPVWQVAWAHPKYGNLLAS 262
LKGH G + ++W++ + G+LL +
Sbjct: 167 LKGHEGEGYGMSWSNTREGHLLTA 190
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 176 TLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKV 283
++++ L+ H V QVAW HP +LL SCSYD +
Sbjct: 147 SVSSILQPHTQDVKQVAW-HPTE-DLLVSCSYDSSI 180
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 221 VAW-AHPKYGNLLASCSYDRKVIIW 292
VAW +PK+ NLL S S D + +W
Sbjct: 309 VAWNPNPKFSNLLTSASDDGTIRLW 333
>AC025727-6|AAY55898.1| 558|Caenorhabditis elegans Hypothetical
protein Y73E7A.9 protein.
Length = 558
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +2
Query: 191 LKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
L+GH G V + W K G LLAS S DR V IW
Sbjct: 37 LEGHSGCVNTLRWN--KTGALLASGSDDRNVKIW 68
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 185 ADLKGHFGPVWQVAWAHPKYGNLLASCSYD 274
A KGHFGP+ +AW HP G ++A+ D
Sbjct: 281 ARFKGHFGPINTMAW-HPS-GTIIATGGED 308
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 29.1 bits (62), Expect = 0.58
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 113 ISNMFFAIIR*TIYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
+S F +R I+D+K+G L H PV V++ G+L+AS SYD V IW
Sbjct: 187 VSGSFDESVR--IWDVKTGM--CIKTLPAHSDPVSAVSFNRD--GSLIASGSYDGLVRIW 240
>Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical
protein F53C11.8 protein.
Length = 388
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I DI+ L L+ H GPV +AWA P + + + D + +IW
Sbjct: 295 ILDIRMPCNILCR-LRNHTGPVNGIAWA-PHSPHHICTAGDDSQALIW 340
>AF000265-5|AAK68197.1| 331|Caenorhabditis elegans Hypothetical
protein C18E3.5 protein.
Length = 331
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 191 LKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
L+GH G ++ ++ G+ LAS YD+++ +W
Sbjct: 32 LQGHGGEIYTSQFSSD--GSFLASAGYDQQIFLW 63
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
++D+ SG LKGH V+ + +P G L+AS S+D + IW
Sbjct: 174 VFDVSSGR--CVKTLKGHTNYVFCCCF-NPS-GTLIASGSFDETIRIW 217
>Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical
protein F52A8.2 protein.
Length = 356
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I+D++SG L + GH G V+ + GN S D+ ++W
Sbjct: 182 IWDVESGQ--LIQNFHGHTGDVFAIDVPKCDTGNTFISAGADKHSLVW 227
>AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeric G
protein beta subunit2 protein.
Length = 356
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I+D++SG L + GH G V+ + GN S D+ ++W
Sbjct: 182 IWDVESGQ--LIQNFHGHTGDVFAIDVPKCDTGNTFISAGADKHSLVW 227
>AF040652-5|AAB95022.2| 378|Caenorhabditis elegans Hypothetical
protein T05A8.5 protein.
Length = 378
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 146 TIYDIKSGTQTLAADLKGHFGPVWQVAWAH-PKYGNLLASCSYDRKVIIW 292
T YD+++ Q+ A +GH G V ++ + LLAS S DR++ +W
Sbjct: 253 TSYDVRNPRQSREA--RGHEGNVTSLSIVQMDQTKRLLASVSADRQIRLW 300
>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
protein T05C3.2 protein.
Length = 1733
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +2
Query: 92 TGLLWFEISNMFFAIIR*TIYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSY 271
T + + +F A +R ++ T L L HFG + + + N+L S S
Sbjct: 1297 TAVTFASHDTVFVAGVRKHLFLWNVSTTELLRSLDAHFGRILNLDSVSHQGQNILISSSL 1356
Query: 272 DRKVIIW 292
D + IW
Sbjct: 1357 DHTIKIW 1363
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 170 TQTLAADL-KGHFGPVWQVAWAHPKYG-NLLASCSYDRKVIIW 292
T+TL L +GH V V P + +LLASCS D +I W
Sbjct: 348 TKTLDCQLIRGHTESVLSVV--SPTWDTSLLASCSKDNSIIFW 388
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 179 LAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
+A L GH V V +A K + LASCS D + IW
Sbjct: 515 IAGTLSGHRRGVGDVKFA--KNSHKLASCSGDMTIKIW 550
>Z81113-5|CAB03282.3| 404|Caenorhabditis elegans Hypothetical
protein T03F6.5 protein.
Length = 404
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 63 GHEDMIHDAELDYYGLRLATCSS 131
GH D ++D +D G +L +CSS
Sbjct: 146 GHTDAVNDIAIDAAGKQLVSCSS 168
>AF164430-1|AAF82632.1| 404|Caenorhabditis elegans LIS-1 protein.
Length = 404
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 63 GHEDMIHDAELDYYGLRLATCSS 131
GH D ++D +D G +L +CSS
Sbjct: 146 GHTDAVNDIAIDAAGKQLVSCSS 168
>U58757-4|AAC47922.3| 580|Caenorhabditis elegans Hypothetical
protein C01B10.4 protein.
Length = 580
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 272 RKSMMQASFRTWDVPKLLAILDQNDLSDLLLGFAYHSLYRILFTELSRRTCC 117
+K + Q S +T VP + L+QND + L+G + ++ L + R CC
Sbjct: 510 KKKLKQISLKT--VPFIEKPLEQNDEAGTLIGVSLIAISIFLIGCIFGRYCC 559
>U29154-4|AAA68420.2| 288|Caenorhabditis elegans Hypothetical
protein T07F12.4 protein.
Length = 288
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +2
Query: 236 PKYG-NLLASCSYDRKVIIW 292
P+ G NLL +C YD KV +W
Sbjct: 187 PEVGANLLKTCQYDSKVDMW 206
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical protein
F29G6.3c protein.
Length = 1453
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 108 NHNSPVQHHVSYPHDPCRS 52
+ SP+ H PHD C S
Sbjct: 1328 SQRSPISHETFQPHDECNS 1346
>Z78543-3|CAB01755.2| 772|Caenorhabditis elegans Hypothetical
protein F29G6.3a protein.
Length = 772
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 108 NHNSPVQHHVSYPHDPCRS 52
+ SP+ H PHD C S
Sbjct: 647 SQRSPISHETFQPHDECNS 665
>Z75711-4|CAB00030.1| 134|Caenorhabditis elegans Hypothetical
protein K02B12.6 protein.
Length = 134
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 17 TKYLKNDNCSKYDRHGS*GYDT 82
+KY ++ KYD HG+ G D+
Sbjct: 46 SKYYNTESYGKYDEHGNNGKDS 67
>Z69664-1|CAA93514.1| 325|Caenorhabditis elegans Hypothetical
protein K04D7.1 protein.
Length = 325
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 179 LAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
L L+GH G V Q+A + S S D+ +++W
Sbjct: 8 LTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTILVW 45
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +2
Query: 176 TLAADL-KGHFGPVWQVAW 229
TL +L +G FG VWQ W
Sbjct: 114 TLCKELGQGEFGSVWQAGW 132
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 149 IYDIKSGTQTLAADLKGHFGPVWQVAWAHPKYGNLLASCSYDRKVIIW 292
I++ ++G L H PV + W N + SCS D+ +W
Sbjct: 40 IFEWRNGDWQSIHTLSEHDLPVTGLDWGTKT--NRIVSCSQDKNAFVW 85
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +2
Query: 176 TLAADL-KGHFGPVWQVAW 229
TL +L +G FG VWQ W
Sbjct: 114 TLCKELGQGEFGSVWQAGW 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,693,719
Number of Sequences: 27780
Number of extensions: 118219
Number of successful extensions: 327
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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