Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P10
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    31   0.032
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   2.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   2.8  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   3.7  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    24   4.8  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   4.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    24   4.8  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   6.4  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    24   6.4  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    23   8.5  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    23   8.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        23   8.5  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 31.5 bits (68), Expect = 0.032
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -2

Query: 161 IITPWTSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 51
           II+ W+S+++++SS  G + ++   LLFLR    ++S
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSS 502


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  RQHEHRIHSESRAHQHNHRRPRGDDEHAH 173
           R++E R    SRAH +++   R DD+ +H
Sbjct: 189 RRYEERSSRSSRAHDYDYEDLR-DDDRSH 216


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +3

Query: 96  EHRIHSES---RAHQHNHRRPRGDD 161
           E+R +S S   R H   +RRPRGD+
Sbjct: 241 EYRRNSRSDYRRPHDDEYRRPRGDE 265


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 180 KRYGHVHHHPVDVCG 136
           KR+ +  H P+ VCG
Sbjct: 151 KRFAYTRHEPIGVCG 165


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 179 NGMGMFIITPWTSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 51
           +G+G+FIIT + S+++ VS   G+ +  +L   +LR   S+ S
Sbjct: 228 SGIGIFIITFFISLLIGVS--IGLITALLLKYSYLRRYPSIES 268


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 123 AHQHNHRRPRGDDEHAHTV 179
           A + +  RP  DD HAHTV
Sbjct: 691 AQEQDFVRPVVDDSHAHTV 709


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 83  VTSA*TSNSLRIKSSPA*PQTST 151
           +TS  TS++++I S P+ P T T
Sbjct: 211 ITSMNTSSNVKISSDPSSPSTQT 233


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
 Frame = -2

Query: 290 SDMILILAA---WLYS*QAPFGWSGQVRPLSLQASLSARGNGMGMFIITPWTSVVMLVSS 120
           +D++L+  A   W++    P  WS   + + +  +    GN      +  W  V + +  
Sbjct: 262 ADVVLLAGARLNWIFQYGLPPKWSPNAKFIQIDTNAETLGNNAADLDLAIWADVGLTIDC 321

Query: 119 *F 114
            F
Sbjct: 322 LF 323


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 121 ELTSITTD--VHGVMMNMPIPFPLADR 195
           EL  +  D  VHGV++ +P+P  L +R
Sbjct: 113 ELKKLNDDHTVHGVLVQLPLPKHLNER 139


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 214 LYPCKRLCQLEETVWACSSSPR 149
           LYPC RL +L   +   S SP+
Sbjct: 149 LYPCNRLDRLTSGLMFFSKSPK 170


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 181 ETVWACSSSPRGRLWLC 131
           + VW+  S P G+++LC
Sbjct: 506 DIVWSVLSHPHGKVYLC 522


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 46  SQDAKECVLRRNSNVSMNIEFTPNQELTSITTD 144
           S DAK+     NS  S   +  P  E+T+IT +
Sbjct: 271 SDDAKKPEKEENSAASTLDDLEPQYEMTTITIE 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,370,001
Number of Sequences: 5004
Number of extensions: 25432
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)