Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P09
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 130 9e-32
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 128 2e-31
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 0.93
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 2.1
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 3.7
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 4.9
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 4.9
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 24 6.5
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 24 8.6
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 130 bits (313), Expect = 9e-32
Identities = 59/115 (51%), Positives = 78/115 (67%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M V+VKDV+ K + AA LK+ GK+ P +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RHIY+R VGV + K++GG G+ PSH SGS+ RK +Q+LE + ++EK
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEK 115
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 128 bits (310), Expect = 2e-31
Identities = 58/115 (50%), Positives = 78/115 (67%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M V+VKDV+ + + AA LK+ GK+ P +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RHIY+R VGV + K++GG G+ PSH SGS+ RK +Q+LE + ++EK
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEK 115
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 0.93
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 3 TRTQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDH 119
T ++ +S T+K T A+ KKI + +PDH
Sbjct: 114 TDSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 243 QS*LQQESGYRCDAV*QHSVHKTNQGHR 160
QS +++SGY D V S H+T + HR
Sbjct: 90 QSFQREDSGYNDDVVTNSSSHRTPRHHR 117
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 15 GKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 140
G+ + V D+E +K+++ HL + +K+ +D++ TA
Sbjct: 224 GEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 108 PSLCRSFSSERLQF*RFCLVQHPSL 34
PSL SFS E F CL ++PSL
Sbjct: 542 PSLPDSFSPEARDFVNKCLNKNPSL 566
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 4.9
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 81 HLKKIGKVKVPDHMDLVKTAR--FKELAPYDPDWFYVRCAAILRHIYI 218
H K K P H D KT+R KE P P Y R + R YI
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSRNTSKEGLPSSPTMLY-RTTSNTRGDYI 673
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 24.2 bits (50), Expect = 6.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 115 IIWTW*RQLVSRNWL 159
I W+W QL++R W+
Sbjct: 177 ISWSWLLQLIARTWM 191
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 198 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKA 329
++R+ S +G +++ GG GVTPSH S A +A
Sbjct: 389 LMRNREQSSLLGQESIPLQPGGTGYTGVTPSHAANGSALAAPQA 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,901
Number of Sequences: 5004
Number of extensions: 27187
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -