Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P09
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   140   4e-34
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613...    29   0.86 
11_01_0645 + 5185341-5185568,5185773-5185823                           27   3.5  
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697...    27   4.6  
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    27   4.6  
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733...    26   8.1  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  140 bits (338), Expect = 4e-34
 Identities = 60/110 (54%), Positives = 83/110 (75%)
 Frame = +3

Query: 33  TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 212
           TVKDV   + VK  +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 213 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVE 362
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIID 117


>05_07_0095 -
           27659944-27660795,27660900-27661172,27661280-27661354,
           27661683-27661837,27661935-27662051,27662148-27662487
          Length = 603

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 3   TRTQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPD 173
           TRTQ  MR  ++   + DK+V    A ++++G+      M+ V    F  ++P D D
Sbjct: 501 TRTQESMRMASLSRYDTDKVVIDAKAEVERLGR------MEPVSATLFDFVSPRDQD 551


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 210 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 326
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>02_02_0119 +
           6978697-6979045,6979519-6979581,6979757-6979866,
           6979969-6980154,6980266-6980361,6980493-6980564,
           6980798-6980909,6982448-6982534,6982680-6983872
          Length = 755

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  RQDAFRYSEGC*TRQNRQNCSRSLEKDRQSEGSRSYGLGKDSSFQGT 154
           +Q A+ YS    T+  +Q  S+    D+Q  G+  YG   +S+  G+
Sbjct: 508 QQQAYDYSSYYQTQGQQQGYSQQTGYDQQGYGTSGYGSAANSTQDGS 554


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 134 LYQVHMIW--NLHFADLFQVSGYSFDDFV 54
           L  +H +W  ++ FAD+  +S  +FD+FV
Sbjct: 362 LASLHQVWKFSITFADVLGLSSVTFDEFV 390


>03_03_0116 -
           14572258-14572881,14573026-14573127,14573253-14573345,
           14573445-14573591,14573690-14573780,14573873-14573961,
           14574061-14574126,14574241-14574762
          Length = 577

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 83  LEKDRQSEGSRSYGLGKDSSFQGT 154
           LE+    +G RSY LGK  SF+ T
Sbjct: 475 LERINSKKGMRSYQLGKQLSFRWT 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,415,397
Number of Sequences: 37544
Number of extensions: 178421
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)