Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P09
(369 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 152 4e-37
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 152 4e-37
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 152 4e-37
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 152 4e-37
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 152 4e-37
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 151 9e-37
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 31 1.2
CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein. 30 2.0
BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type c... 30 2.0
AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA seq... 30 2.0
AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein. 30 2.0
BC063800-1|AAH63800.1| 1000|Homo sapiens SEC23 interacting prote... 30 2.7
AB019435-1|BAA77392.1| 1000|Homo sapiens phospholipase protein. 30 2.7
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein. 29 3.5
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein. 29 3.5
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein. 29 3.5
BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 28 8.2
BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 28 8.2
BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA pro... 28 8.2
AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein ... 28 8.2
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 152 bits (368), Expect = 4e-37
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEK 115
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 152 bits (368), Expect = 4e-37
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEK 115
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 152 bits (368), Expect = 4e-37
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEK 115
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 152 bits (368), Expect = 4e-37
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEK 115
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 152 bits (368), Expect = 4e-37
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 21 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 200
M VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST 60
Query: 201 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
RH+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK
Sbjct: 61 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEK 115
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 151 bits (365), Expect = 9e-37
Identities = 69/112 (61%), Positives = 87/112 (77%)
Frame = +3
Query: 30 VTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRH 209
VTVKDV Q + V+ +AA LKK GK+KVP+ +D VK A+ KELAPYD +WFY R A+ RH
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARH 75
Query: 210 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEK 365
+Y+R GV ++TKI+GGR+RNGV PSHF R S S+AR+ LQALE LK+VEK
Sbjct: 76 LYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEK 127
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +3
Query: 162 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKAL 332
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
>CR456387-1|CAG30273.1| 1171|Homo sapiens bA494O16.1 protein.
Length = 1171
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 334 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 221
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>BC117670-1|AAI17671.1| 1171|Homo sapiens zinc finger, BED-type
containing 4 protein.
Length = 1171
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 334 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 221
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AL117328-2|CAB62924.1| 1171|Homo sapiens protein ( Human DNA
sequence from clone RP11-494O16 on chromosome 22
Contains the ZBED4 gene for zinc finger, BED-type
containing 4, the gene for ).
Length = 1171
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 334 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 221
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 332 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 368
>AB014537-1|BAA31612.2| 1175|Homo sapiens KIAA0637 protein protein.
Length = 1175
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 334 WRALRAILPDDLQK*EGVTPLRLRPPKILVTVLTPTGE 221
WRA RAI+ + G+ PL PP +L ++L P GE
Sbjct: 336 WRAHRAIVLQE-NGGTGIPPLYSTPPTLLPSLLPPEGE 372
>BC063800-1|AAH63800.1| 1000|Homo sapiens SEC23 interacting protein
protein.
Length = 1000
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 215 IDVTQYSSTAYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDDFVLFNIL- 39
+D+ Y+S Y + I + +E + L+ + M N F V+G+S +LF+IL
Sbjct: 537 LDILFYNSPTYCQTI--VEKVGMEINHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILS 594
Query: 38 HCNGTHLALCP 6
+ +L+ CP
Sbjct: 595 NQKDLNLSKCP 605
>AB019435-1|BAA77392.1| 1000|Homo sapiens phospholipase protein.
Length = 1000
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 215 IDVTQYSSTAYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDDFVLFNIL- 39
+D+ Y+S Y + I + +E + L+ + M N F V+G+S +LF+IL
Sbjct: 537 LDILFYNSPTYCQTI--VEKVGMEINHLHALFMSRNPDFKGGVSVAGHSLGSLILFDILS 594
Query: 38 HCNGTHLALCP 6
+ +L+ CP
Sbjct: 595 NQKDLNLSKCP 605
>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
Length = 1481
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 77 RSLEKDRQSEGSRSYGLGKDSSFQGTGS 160
++L K+R GS S+ LG+ SS+QGTGS
Sbjct: 1359 QTLVKNRTFSGSLSH-LGESSSYQGTGS 1385
>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
Length = 1490
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 77 RSLEKDRQSEGSRSYGLGKDSSFQGTGS 160
++L K+R GS S+ LG+ SS+QGTGS
Sbjct: 1368 QTLVKNRTFSGSLSH-LGESSSYQGTGS 1394
>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
Length = 1535
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 77 RSLEKDRQSEGSRSYGLGKDSSFQGTGS 160
++L K+R GS S+ LG+ SS+QGTGS
Sbjct: 1413 QTLVKNRTFSGSLSH-LGESSSYQGTGS 1439
>BC018698-1|AAH18698.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 9 TQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 140
T G ++V V D ++I+ T+ H KK+ V DLV +A
Sbjct: 239 TGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
>BC018665-1|AAH18665.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 9 TQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 140
T G ++V V D ++I+ T+ H KK+ V DLV +A
Sbjct: 239 TGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
>BC008719-1|AAH08719.1| 504|Homo sapiens PRP19/PSO4 pre-mRNA
processing factor 19 homolog (S. cerevisiae) protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 9 TQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 140
T G ++V V D ++I+ T+ H KK+ V DLV +A
Sbjct: 239 TGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
>AJ131186-1|CAB51857.1| 504|Homo sapiens nuclear matrix protein
NMP200 protein.
Length = 504
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 9 TQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 140
T G ++V V D ++I+ T+ H KK+ V DLV +A
Sbjct: 239 TGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSA 282
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,212,875
Number of Sequences: 237096
Number of extensions: 1029018
Number of successful extensions: 2361
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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