Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P08
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 120 6e-29
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 35 0.004
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 29 0.25
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 28 0.57
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 3.0
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 4.0
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr... 24 7.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 9.3
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 9.3
SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyc... 24 9.3
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 120 bits (290), Expect = 6e-29
Identities = 60/110 (54%), Positives = 75/110 (68%), Gaps = 6/110 (5%)
Frame = +1
Query: 49 SRRIGSVIRTIGASRQKHT---LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAA 219
S+ + IR + +R HT LP LP+ Y+ALEP +S IM LHH KHH TYVNNLNAA
Sbjct: 6 SKNSVAAIRNVSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAA 65
Query: 220 EEKLTQAQAKGDIDTIISLAPALKFNGGGHINHSIFWKNLSP---NGGKP 360
+EKL A D++ ++L A+KFNGGGHINHS+FWK L+P GGKP
Sbjct: 66 QEKL--ADPNLDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKP 113
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 35.1 bits (77), Expect = 0.004
Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Frame = +1
Query: 91 RQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII 270
RQKHT P P SA SR HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA-----SR-----HHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 271 SLAPALKFNGGGHINHSIFWKNL-----SPNGGKPSDV 369
S +P+ F G IN+ I KN SP GK SD+
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDI 178
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 29.1 bits (62), Expect = 0.25
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 264 YHQSGTSTKIQWRWSHQPLYFL 329
+H + S KI+W WS+Q L+ L
Sbjct: 133 FHSNENSKKIEWTWSNQSLHTL 154
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 0.57
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 166 NLHHS--KHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPAL-KFNGGGHINHSIFWKN 336
NL H K+HA K+ QA K D +++A + ++N N+ +FW
Sbjct: 150 NLVHELEKYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWY 209
Query: 337 LSPNGG 354
+S +GG
Sbjct: 210 MSKSGG 215
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 273 TDDSINITFSLSLCQFLLGSI*IVNISSMMLGVMQI 166
TD+ + +T S LC FL S + + +++ V++I
Sbjct: 1338 TDEELQVTISFRLCAFLCFSDPFITSNYLVMIVLRI 1373
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 4.0
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +1
Query: 130 SALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDT 264
SAL+ V + ++HH +H T + + NA+ +++ + D+++
Sbjct: 91 SALKEVNTPAYQSMHHFEHLITPLPSTNASHSEVSLSAGVNDLNS 135
>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 178 SKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAP 282
SKHH TYV AE+ + +AQ T++S P
Sbjct: 173 SKHHITYVPK-QEAEDTIIKAQVH---KTLVSAGP 203
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +1
Query: 43 LASRRIGSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHAT 195
L ++ + R I +++ TL EL + + P++ + + HH K ++
Sbjct: 63 LDRNQVYACFRLISQAQRGATLQELDYNKAGDPPILPKQAKDDHHIKRSSS 113
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 23.8 bits (49), Expect = 9.3
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 60 WICYPHH 80
W CYPHH
Sbjct: 435 WTCYPHH 441
>SPAC3G9.04 |ssu72||phosphoric ester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 197
Score = 23.8 bits (49), Expect = 9.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 181 WSDANSLYHG*SRVPERCTRKVIREAYVFDETL 83
W D +S+Y+ ERC + + Y ETL
Sbjct: 99 WQDQDSIYNIVITCEERCYDAICEDLYRRGETL 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,123
Number of Sequences: 5004
Number of extensions: 29102
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -