Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P08
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 93 7e-20
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 47 6e-06
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 40 9e-04
06_01_0286 - 2094920-2097805 29 1.2
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 28 2.9
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777 27 3.8
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 27 3.8
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 26 8.7
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 26 8.7
02_05_0334 + 28013726-28013880,28014430-28014528,28014875-280152... 26 8.7
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 26 8.7
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 93.1 bits (221), Expect = 7e-20
Identities = 42/67 (62%), Positives = 49/67 (73%)
Frame = +1
Query: 106 LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPA 285
LP+LP++Y ALEP IS +IM LHH KHHATYV N N A E+L A AKGD I+ L A
Sbjct: 33 LPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSA 92
Query: 286 LKFNGGG 306
+KFNGGG
Sbjct: 93 IKFNGGG 99
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 46.8 bits (106), Expect = 6e-06
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Frame = +1
Query: 115 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKG-DIDTIISLA---- 279
L F ALEP IS+ + LH KH YV++LN ++L + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 280 -PALKFNGGGHI-NHSIFWKNLSPNGG 354
P ++N + NH FW+++ P GG
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGG 156
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 39.5 bits (88), Expect = 9e-04
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Frame = +1
Query: 115 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLN-----AAEEKLTQAQAKGDIDTIISLA 279
LP+ ALEP IS++ + H H +V LN + E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 280 PALKFNGGGHI-NHSIFWKNLSP-NGGKPSDVLTK 378
P F I NH +W+++ P GGKP + L K
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLK 223
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 61 GSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQA 240
G + TIG +L L ++ L +I + +LH H NNL+ + +Q
Sbjct: 796 GHIPETIG---NMSSLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQL 852
Query: 241 QAKGDIDTII 270
Q GD D I
Sbjct: 853 QTLGDEDPYI 862
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 105 RMFLTRRSYGADNRSNSARCQHLEQEIIKPAGTS 4
R FL RR + + + A CQ + Q+++ P G++
Sbjct: 562 REFLRRRGHRLRSTGSGAVCQFIVQDLLAPVGSA 595
>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
Length = 248
Score = 27.5 bits (58), Expect = 3.8
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +1
Query: 91 RQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII 270
R++H +P L F S P S HH HHAT A+ +A G + I
Sbjct: 91 RRRHRVPILAFPISGGSPPPS------HHPPHHATATAPPFGADHTSAKAALTGILTAIF 144
Query: 271 SLA 279
S A
Sbjct: 145 SSA 147
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 45 GISQNWICYPHHRSVSSKTYASRITFRVQRSGTRDQ 152
G S+N HHR +S+T +SRI+ R RD+
Sbjct: 43 GSSRNHSSSGHHRDQNSRTSSSRISSNGPRKHDRDR 78
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 26.2 bits (55), Expect = 8.7
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +1
Query: 22 YNLLFKMLASRRIGSVIRTIGASRQKHTLPELPFEYSALEPVISRDIM---NLHHSKHHA 192
Y LF ++ R ++ + A + L FE +L P R + HH+ +
Sbjct: 719 YPKLFASISKMRSLRTLKVLSAEGNQG----LNFEALSLPPQNLRKLHLTGRFHHAVMES 774
Query: 193 TYVNNLNAAEEKLTQAQAKGDIDTIISLA 279
+ + A EKL +K +ID +IS++
Sbjct: 775 NFFQTVGAKLEKLYLTGSKTNIDPLISIS 803
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +1
Query: 91 RQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII 270
R+ H +P L F S P S HH HHAT A+ +A G + I
Sbjct: 120 RRHHRVPILTFPISGGAPPPSS-----HHPPHHATATAPPFGADHTSARAALTGILTAIF 174
Query: 271 SLA 279
S A
Sbjct: 175 SSA 177
>02_05_0334 +
28013726-28013880,28014430-28014528,28014875-28015250,
28015558-28015692,28016466-28016612,28016713-28016817
Length = 338
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 1 ARGTGRFYNLLFKMLASRRIGSVIRTIGASRQKHTLPEL 117
A G GRF N L ++ +R G+ R+IGA K +PEL
Sbjct: 245 ALGCGRFGNCLRYVVLTRTNGTFSRSIGAVVYK--VPEL 281
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 26.2 bits (55), Expect = 8.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 118 PFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPALKFN 297
P Y+++ P + +I L + A NAAE K + A GD D + +L +
Sbjct: 39 PASYNSVPPPPADEIQ-LAKQRAQAIAARLFNAAEAKRPRLDAGGDDDDAGAGVGSLGSS 97
Query: 298 GGG 306
GGG
Sbjct: 98 GGG 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,932
Number of Sequences: 37544
Number of extensions: 200208
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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