Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P07
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   5.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.6  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 192 LQKEGKNYKENCTSSGMCRLQGEVTGGPEAL 284
           ++++ KN  +N T +    ++G+V G  EAL
Sbjct: 464 IEEKRKNKNKNLTPAVNIIVKGDVAGSVEAL 494


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 258 HLAVCTFQTKYNFLCSFC 205
           H A    Q K +F C +C
Sbjct: 5   HCAAAEGQAKKSFSCKYC 22


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 QYKKSKERHAAQGRRRYDRKQ 162
           +Y+K +ER   + R R +R++
Sbjct: 288 EYRKYRERSKERSRDRTERER 308


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -2

Query: 88  ELCDICIFCSMFCAVWV 38
           E+  + IF  ++C++W+
Sbjct: 126 EVFKVWIFGDLWCSIWL 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,102
Number of Sequences: 438
Number of extensions: 1715
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)