Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P06
(222 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 0.77
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 1.4
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 23 5.5
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 23 5.5
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 23 5.5
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 23 5.5
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 23 7.2
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 23 7.2
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 22 9.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 22 9.5
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch... 22 9.5
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 108 KILLLNVPTTSLAWNSYNYILIVRLY 185
K+L L+VP L W N +I ++Y
Sbjct: 685 KVLKLSVPFLGLKWKQANMSIITQIY 710
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Frame = -2
Query: 77 FPPFKIKAL----ILGSCIFLFIY 18
+P F +K+L ILGSC+ +F Y
Sbjct: 339 YPVFALKSLKDRTILGSCVLIFTY 362
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 54 TNS-GFMYFFIYLQCNL 7
TNS GF Y +I+ CNL
Sbjct: 426 TNSIGFKYGYIFASCNL 442
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 132 TTSLAWNSYNYI-LIVRLYTLPLNAIHLITN 221
+TS W +Y + L+ +LY L L+ +HL N
Sbjct: 181 STSRKWGAYYIMGLLFKLY-LRLDCVHLTNN 210
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 90 SFSIGHKILLLNVPTTSLAWNSYNYI---LIVRLYT 188
S S+ H + +LNVPT ++ + N + ++V+L T
Sbjct: 164 SMSLFHVVFVLNVPTATVYRPTVNTMYDHIVVKLVT 199
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 54 TNS-GFMYFFIYLQCNL 7
TNS GF Y +I+ CNL
Sbjct: 396 TNSIGFKYGYIFASCNL 412
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 121 SNKILCPIEKLWNLRFLHLK*RH*FWVHVFF 29
SNK LCP+ K FL + H F+V F
Sbjct: 159 SNKFLCPLSKYLIYLFLSI---HLFYVFQSF 186
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 54 TNS-GFMYFFIYLQCNL 7
TNS GF Y +I+ CNL
Sbjct: 426 TNSIGFKYGYIFAACNL 442
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 213 SDGLHLEVEYIDGLLEYNYMNSM 145
SDG+HL V+ E N+ +M
Sbjct: 384 SDGIHLVVDEKSNFREENFQRAM 406
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 112 ILCPIEKLWNLRFLHLK 62
+LCP ++NL LHL+
Sbjct: 258 LLCPSISIFNLILLHLR 274
>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 321
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 164 YSNSPSIYSTSKCNPSDY 217
Y+N Y+TS CN +Y
Sbjct: 71 YTNMIRTYATSDCNTLEY 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 971,917
Number of Sequences: 5004
Number of extensions: 16689
Number of successful extensions: 53
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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