Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P06
         (222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0746 - 31636024-31641396                                         27   2.0  
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044     26   4.7  
03_06_0747 - 35967119-35967185,35967325-35967422,35967533-359675...    26   4.7  
11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389           25   6.2  
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72...    25   8.3  
05_06_0204 + 26354319-26356967                                         25   8.3  

>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 208  WIAFRGRVYRRTIRI*LYEFHASEVVGTLSN 116
            W ++RG+   RT+R  +Y + A +++  L N
Sbjct: 989  WASYRGQTLARTVRGMMYYYRALKMLAFLDN 1019


>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
          Length = 578

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  KFHSFSIGHKILLLNVPTTSLAWNSYNY 164
           +F  ++  H I+L+N P  +L  N +NY
Sbjct: 288 EFRRYNGEHPIVLVNTPLVNLISNFFNY 315


>03_06_0747 -
           35967119-35967185,35967325-35967422,35967533-35967574,
           35967734-35967782,35967971-35968047,35968306-35968362,
           35968511-35968611,35968698-35969106
          Length = 299

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 72  RKRKFHS-FSIGH-KILLLNVPTTSLAWNSYNYILIVRLYTLPLNAIHLITN 221
           R RK +S  ++ + K+ LLNVP T+LA     +  I  L    +N    ITN
Sbjct: 186 RSRKVYSDLTVDYLKMFLLNVPATTLALGL--FFFIDELTGFEINIFQSITN 235


>11_01_0451 + 3499084-3501757,3501907-3502275,3502358-3502389
          Length = 1024

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 LLNVPTTSLAWNSYNYI 167
           +  +PT SL W S+NY+
Sbjct: 483 IFGIPTISLIWLSFNYL 499


>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
            725738-725840,726106-726264,726728-726846,726891-727004,
            727119-727277,727404-727451,728464-728640,729064-729116,
            729549-729661,729793-729873,729966-730081,730786-730905,
            732321-732429,732593-732770,732852-732920,733102-733233,
            733657-733766,733843-734003,734081-734171,734258-734355,
            734499-734619,734732-734892,734985-735090,735142-735236,
            735828-735852,736008-736084,736196-736282,736372-736421,
            736558-736639,736735-736795,737064-737116,737206-737395,
            737472-737595,737860-737962,738064-738156,740344-740422,
            740508-740584,740915-741043,742614-742731,742816-742913,
            743457-743546,744998-745123,745238-745351,745488-745611,
            745865-746019,746104-746201,746357-746600
          Length = 1926

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 208  WIAFRGRVYRRTIRI*LYEFHASEVVGTLSNKILCPIE 95
            W+++RG+   RT+R  +Y   A  +   L  + L  IE
Sbjct: 1146 WVSYRGQTLARTVRGMMYYRRALMLQSYLEKRYLGGIE 1183


>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = +3

Query: 54  CLYFKWRKRKFHSFSIGHKILLLNVPTTSLAWNS 155
           C + +W  + F S      ++++N   +   WNS
Sbjct: 519 CHHIEWASQLFSSTLFPRNLVIINAMISGYCWNS 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,810,703
Number of Sequences: 37544
Number of extensions: 91212
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)