Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P06
         (222 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56692-1|CAA40020.1|  224|Homo sapiens C-reactive protein protein.     29   2.7  
M11880-1|AAB59526.1|  224|Homo sapiens protein ( Human C-reactiv...    29   2.7  
M11725-1|AAA52075.1|  224|Homo sapiens protein ( Human C-reactiv...    29   2.7  
BC125135-1|AAI25136.1|  224|Homo sapiens C-reactive protein, pen...    29   2.7  
AL445528-6|CAH73656.1|  224|Homo sapiens C-reactive protein, pen...    29   2.7  
AF449713-1|AAL40835.1|  224|Homo sapiens C-reactive protein, pen...    29   2.7  
AF442818-1|AAL48218.2|  224|Homo sapiens CRP protein.                  29   2.7  

>X56692-1|CAA40020.1|  224|Homo sapiens C-reactive protein protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


>M11880-1|AAB59526.1|  224|Homo sapiens protein ( Human C-reactive
           protein gene, complete cds. ).
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


>M11725-1|AAA52075.1|  224|Homo sapiens protein ( Human C-reactive
           protein gene, complete cds. ).
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


>BC125135-1|AAI25136.1|  224|Homo sapiens C-reactive protein,
           pentraxin-related protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


>AL445528-6|CAH73656.1|  224|Homo sapiens C-reactive protein,
           pentraxin-related protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


>AF449713-1|AAL40835.1|  224|Homo sapiens C-reactive protein,
           pentraxin-related protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


>AF442818-1|AAL48218.2|  224|Homo sapiens CRP protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 6   RGYTVXXXXXXXXQN*CLYFKWRKRKFHSFSIGHKILLLNVPTTSLA 146
           RGY++         N  L F W K   +SF++G   +L  VP  ++A
Sbjct: 65  RGYSIFSYATKRQDNEILIF-WSKDIGYSFTVGGSEILFEVPEVTVA 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,918,103
Number of Sequences: 237096
Number of extensions: 524760
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 76,859,062
effective HSP length: 52
effective length of database: 64,530,070
effective search space used: 1355131470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)