Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P06
         (222 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    26   4.2  
Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    25   5.5  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    25   5.5  
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    25   5.5  
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U88311-4|AAB42344.1|  537|Caenorhabditis elegans Udp-glucuronosy...    25   7.3  
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    25   7.3  
Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical
           protein F21H12.1 protein.
          Length = 454

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 72  RKRKFHSFSIGH-KILLLNVPTTS-LAWNSYNYILIVRLYTLPLNAIHLITN 221
           RK K+     G  K+L+ N  T   +AW   N +  +R   +P+ +  +ITN
Sbjct: 165 RKGKYIIAGTGKGKLLIYNAETLKCVAWCKQNTVQQIRQIIVPMKSRFIITN 216


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
          receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 83 FTFPPFKIKALILGSCIFLFIYSVTS 6
          F +PPF + +L L S +++ IY+ T+
Sbjct: 10 FYWPPFYLLSLCLFSTMYILIYNFTT 35


>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 196 RGRVYRRTIRI*LYEFHASEVVGTLSNK 113
           R R++R  +R  LY+FH  E++ ++ N+
Sbjct: 389 RMRIFRSLVRN-LYDFHREEILASIINE 415


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 196 RGRVYRRTIRI*LYEFHASEVVGTLSNK 113
           R R++R  +R  LY+FH  E++ ++ N+
Sbjct: 389 RMRIFRSLVRN-LYDFHREEILASIINE 415


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 105  HKILLLNVPTTSLAWNSYNYILIVRLYTLPLNAIHL 212
            H ++ +  PT    WN  + I   R Y +P N  HL
Sbjct: 2655 HVVVTVIPPTNLTTWNIPSVIFATRNYNIP-NLFHL 2689


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 196 RGRVYRRTIRI*LYEFHASEVVGTLSNK 113
           R R++R  +R  LY+FH  E++ ++ N+
Sbjct: 389 RMRIFRSLVRN-LYDFHREEILASIINE 415


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 196 RGRVYRRTIRI*LYEFHASEVVGTLSNK 113
           R R++R  +R  LY+FH  E++ ++ N+
Sbjct: 389 RMRIFRSLVRN-LYDFHREEILASIINE 415


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 LNVPTTSLAWNSYNYILIVRLY 185
           L++PTT   W S+N  +  +LY
Sbjct: 795 LHIPTTVQQWQSFNQTVNAQLY 816


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 LNVPTTSLAWNSYNYILIVRLY 185
           L++PTT   W S+N  +  +LY
Sbjct: 795 LHIPTTVQQWQSFNQTVNAQLY 816


>U88311-4|AAB42344.1|  537|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein28 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 34  IHEPRISAFILNGGNVNSTVSL 99
           +++PR+SAF+ +GG + ST+ L
Sbjct: 367 LNDPRLSAFVTHGG-LGSTMEL 387


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 86  EFTFPPFKIKALILGSCIFLFIYSVTSC 3
           EF    +K+       CIFLFI+ +  C
Sbjct: 266 EFLTQTWKLMNKCTSGCIFLFIFPIYKC 293


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 LNVPTTSLAWNSYNYILIVRLY 185
           L++PTT   W S+N  +  +LY
Sbjct: 795 LHIPTTVQQWQSFNQTVNAQLY 816


>Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical
           protein C31G12.1 protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 114 LLLNVPTTSLAWNSYNYILIVRLYTL-PLNAIHLI 215
           LL+N    ++AW S+ +I     +T+  LN++ L+
Sbjct: 51  LLMNTVAVTIAWFSFGWISTKNYFTVWRLNSLSLV 85


>AC006748-3|AAF60513.2|  382|Caenorhabditis elegans Hypothetical
           protein Y39A3B.2 protein.
          Length = 382

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 104 PNRETVEFTFPPFKIKALILGSCIFLFIYSVT 9
           P R   E   P F I+AL    C  +F+Y++T
Sbjct: 148 PIRFNPEIDLPEFHIRALDKDYCNGVFLYTLT 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,179,210
Number of Sequences: 27780
Number of extensions: 86987
Number of successful extensions: 324
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)