Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P05
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   197   5e-53
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   197   5e-53
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  197 bits (481), Expect = 5e-53
 Identities = 90/104 (86%), Positives = 99/104 (95%)
 Frame = +3

Query: 213 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 392
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 393 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 524
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104



 Score = 28.3 bits (60), Expect = 0.051
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 240 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 419
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 420 LSFWRGNFANVIRYFPTQALNFAFKD 497
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 300 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 458
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  197 bits (481), Expect = 5e-53
 Identities = 90/104 (86%), Positives = 99/104 (95%)
 Frame = +3

Query: 213 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 392
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 393 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 524
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGG
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGG 104



 Score = 28.3 bits (60), Expect = 0.051
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = +3

Query: 240 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 419
           F  +  +GG + A S   V P++  +  L    V K   E + + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172

Query: 420 LSFWRGNFANVIRYFPTQALNFAFKD 497
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 300 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 458
           P + V+  + +Q  S +   +  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 355 AICLLTCWT 329
           A C+L+CWT
Sbjct: 103 ATCVLSCWT 111


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 355 AICLLTCWT 329
           A C+L+CWT
Sbjct: 156 ATCVLSCWT 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 443 EVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 345
           E+T P  E+T+ + N  E + +T V    +L D F
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 80  DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 187
           D  ++P   I+NR  +  G S P   +     K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,250
Number of Sequences: 438
Number of extensions: 3543
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)