Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_P04
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 182 1e-46
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 168 2e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 156 8e-39
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 126 8e-30
02_02_0511 + 11072699-11073146,11076148-11076365 31 0.69
02_02_0355 + 9312814-9313650 30 1.2
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 29 1.6
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340... 29 1.6
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 182 bits (444), Expect = 1e-46
Identities = 90/131 (68%), Positives = 104/131 (79%)
Frame = +1
Query: 61 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 421 VTNAAARLRSQ 453
VTN ARLRSQ
Sbjct: 120 VTNKLARLRSQ 130
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 168 bits (408), Expect = 2e-42
Identities = 81/122 (66%), Positives = 97/122 (79%)
Frame = +1
Query: 61 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 240
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 241 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIR 420
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 421 VT 426
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 156 bits (379), Expect = 8e-39
Identities = 73/99 (73%), Positives = 84/99 (84%)
Frame = +1
Query: 157 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 336
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 337 KYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQ 453
YCAEIAH VS+KKRK IVERA QL I VTN ARLRSQ
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQ 197
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 61 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 153
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 126 bits (305), Expect = 8e-30
Identities = 59/94 (62%), Positives = 74/94 (78%)
Frame = +1
Query: 55 FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG 234
++M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379
Query: 235 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 336
YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>02_02_0511 + 11072699-11073146,11076148-11076365
Length = 221
Score = 30.7 bits (66), Expect = 0.69
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 491 FSWTIFYIIYSFSWERRRAAALVTLMLSCWARSTIAFRFFEETPCAISAQYFLF 330
+S FY + ++ AA V + SC + F +F + PC AQY+ +
Sbjct: 130 YSLADFYAFSNATFANPSAAGFVNIDSSCCPGPCMPFPYFNQPPCDNRAQYWFW 183
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 219 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTWRLLEKTEGYSR 395
D+Q WL +D HA P+ GD D + E R R W EG+ R
Sbjct: 3 DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW----TAEGFGR 57
>06_01_0883 +
6768998-6769381,6769518-6769616,6769664-6769726,
6770883-6770931,6771338-6771405,6771463-6771715,
6772244-6772380,6772708-6772821,6773059-6773258,
6773367-6773561,6773650-6773812
Length = 574
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 485 WTIFYIIYSFSWERRRAAALVTLMLSC 405
W FY++YSF + R+ A +V ML C
Sbjct: 394 WWKFYLLYSFFFVRKVVAHVVPFMLYC 420
>03_01_0438 +
3399203-3399297,3399389-3399480,3399638-3399750,
3400345-3400610,3400793-3400864,3401023-3401098,
3401241-3401339,3401432-3401586,3401679-3401783,
3401880-3401966,3402459-3402543,3402626-3402734,
3403468-3403544,3403635-3403715,3404137-3404328,
3404415-3404528,3404650-3404742,3404864-3404990,
3405075-3405151,3405455-3405502,3405588-3405657,
3405737-3405810,3405895-3406005,3406222-3406300,
3406936-3408320
Length = 1293
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = -2
Query: 497 PLFSWTI--FYIIYSFSWERRRAAALVTLMLSCWARSTIA---FRFFEETPCAISAQYFL 333
P W+I Y +++ ER A +++TLM++C++ + F F + ++ ++
Sbjct: 166 PDIRWSISRLYYLFNSQLERNIALSIITLMITCFSLVVVGGFLFHKFRKNQQSLEECFWE 225
Query: 332 FCIIRISSSRTLWTKT-LRKPLG 267
ISSS L KT + + LG
Sbjct: 226 AWACLISSSTHLRQKTRIERVLG 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,672
Number of Sequences: 37544
Number of extensions: 307169
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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