Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P02
         (99 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   0.19 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    18   9.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 0.19
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 99  AVLSPMLRNAPAIPLNISEFFL 34
           A++ P L+N  AIP  +S  FL
Sbjct: 392 ALVRPFLKNPDAIPAFLSSLFL 413


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 4.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 33  IKKTQKCSVES 65
           I + QKCS+ES
Sbjct: 397 IDEDQKCSIES 407


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.2 bits (35), Expect = 9.3
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 8   GSHSSTVHNK 37
           G H++T HN+
Sbjct: 407 GLHTTTAHNR 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,174
Number of Sequences: 438
Number of extensions: 273
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 14
effective length of database: 140,211
effective search space used:  2523798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)