Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P01
         (456 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7NTC9 Cluster: Chromosome chr18 scaffold_1, whole geno...    33   3.8  
UniRef50_Q3ZWH8 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  

>UniRef50_A7NTC9 Cluster: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr18 scaffold_1, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 253

 Score = 32.7 bits (71), Expect = 3.8
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = +1

Query: 100 LPLIIDTIIQMHNSFFFLFSAGFCPLTSSDRLSR*SVNNVFLFRDTLVLISTILLEIKGL 279
           +PL  DT+++++ +   +FS G   L   DR+ + S    F+  D++ L  ++  E+   
Sbjct: 61  IPLSPDTLLEVNGTRSSIFSDGVSSLLRRDRVDKKSEEATFVSTDSIRLTGSVKFEV--- 117

Query: 280 FLAKDIIL 303
           F  +D+IL
Sbjct: 118 FDKEDLIL 125


>UniRef50_Q3ZWH8 Cluster: Putative uncharacterized protein; n=1;
           Dehalococcoides sp. CBDB1|Rep: Putative uncharacterized
           protein - Dehalococcoides sp. (strain CBDB1)
          Length = 1023

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 88  QTKRLPLIIDTIIQMHNSFFFLFSAGFCPLTSSDRLSR*SVNNVFLFRDTLVLISTILLE 267
           ++K  PL++    +    F FL    F P  S D + + S  N  L R+   L+S  L +
Sbjct: 273 KSKASPLVVFFPTEQETRFGFLVQGPFLPTPSRDNILKDSEWNKLLIREVAQLVSETLPK 332

Query: 268 IK 273
           +K
Sbjct: 333 LK 334


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,961,764
Number of Sequences: 1657284
Number of extensions: 5523728
Number of successful extensions: 10363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10362
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)