Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_P01
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   1.4  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    26   2.4  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    26   3.1  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   3.1  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   4.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.3  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    24   9.6  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    24   9.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    24   9.6  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   DLFDPQYFQTQLCRYFFYNHMIFFSTFKLN 97
           + F P Y Q ++ + FF    I  STFKLN
Sbjct: 392 EYFVPHYIQNRMSQSFFSVGYIAKSTFKLN 421


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 139 SFFFLFSAGFCPLTSSDRLSR*SVNNVFLFRDTLVLISTILLEIKGLFLAKDIIL 303
           S F +    F    SSD+ +  S  N+F  ++ +VL + + L  K   +   I L
Sbjct: 3   SLFIIMDKRFAVFASSDKPNNCSRKNMFFLKNIIVLSNYLYLLYKAWIVCTTISL 57


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 208 HFNEITYLRRLKDKNLQRKE 149
           HFN  T+L+ L DK    KE
Sbjct: 78  HFNTFTFLKTLMDKGYTEKE 97


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 259 LLEIKGLFLAKDIILISFVRHNVRTFSVGTDMKI 360
           +L  K ++ + D+ L +  RH+++ FSVG   KI
Sbjct: 220 VLHGKRIYFSNDLNLPTNFRHSLQKFSVGIGAKI 253


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 132 HLNNSINYQWQTFSLKVEK 76
           H NN  N+ W+ F  +VEK
Sbjct: 21  HSNNESNFTWKAFREQVEK 39


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 289  KDIILISFVRHN 324
            KDIILISFVR N
Sbjct: 1275 KDIILISFVRSN 1286


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 191 LSEEVKGQKPAEKRKKNELCI*IIVSIINGK 99
           + ++VKG  PA KRKK  + +  I  + NGK
Sbjct: 262 VQDKVKGDGPAAKRKK-RVSMRYIGRLTNGK 291


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 8   DLFDPQYFQTQLCRYFFYNH 67
           D+F   +     CRY FY H
Sbjct: 86  DVFHLSFLYNPFCRYTFYKH 105


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 217 VFLFRDTLVLISTILLEIKGL 279
           +FL +D  V   T+LLE+KG+
Sbjct: 663 IFLVKDRSVTNFTVLLELKGV 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,008
Number of Sequences: 5004
Number of extensions: 26360
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)