Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O24
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 30 0.16
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 29 0.38
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 1.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 2.0
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 2.0
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 2.0
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 27 2.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 2.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 3.5
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 6.1
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 8.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 8.1
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 30.3 bits (65), Expect = 0.16
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 271 DNQMDNLNTLKDHLVKIHNKTIYS-DIKD---HILQFKLKKGDVFDCAMCTSTYETFKML 438
D +L+ L ++ +IH +S D D H +QF LK+G FD A ++ T K +
Sbjct: 983 DTMGRDLSKLVNYFKRIHGTNEHSKDTADFVLHCIQF-LKQGPEFDYAGAWASTNTHKQI 1041
Query: 439 KQHMN 453
+H+N
Sbjct: 1042 IEHVN 1046
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 29.1 bits (62), Expect = 0.38
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 394 DCAMCTSTYETFKMLKQHMNKHYSNYV 474
DC C +++ +F K+HM +S Y+
Sbjct: 209 DCLFCAASFSSFDTCKKHMKASHSLYI 235
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 127 EAAYPDPSDLRQHTVTDHKKER 192
EA PDP DL Q+ + +KER
Sbjct: 1312 EAGLPDPPDLPQYLLDSREKER 1333
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 7 GTRTTQDKMKHRENLQTILNYSNATPFKNKSLLGFICGYCEAAYPDPSDLRQHTVTDHKK 186
GT T MK R+ Q N + P ++ F+C C + LR+H + H
Sbjct: 391 GTIGTDGSMKRRKRRQPS-NRKTSVP-RSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTS 448
Query: 187 ER 192
E+
Sbjct: 449 EK 450
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 462 VMLIHVLF*HFKRFIRRRAHRTIEDITLF 376
V IH + H+K F+R + I +IT F
Sbjct: 355 VPTIHAFYQHYKEFVRPKCLEHIAEITTF 383
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 256 ICTLCDNQMDNLNTLKDHLVKIHNKTIYSDIKDHILQFKLKK 381
+CT C N D + T+ D + ++ D+ +L F K
Sbjct: 271 LCTQCPNLFDCVITVGDDSAALRASWLFQDVVPPVLSFSTAK 312
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 259 CTLCDNQMDNLNTLKDHLVKIHN 327
CT C + D + KDH + IH+
Sbjct: 117 CTFCKTEWDTVLITKDHEIDIHD 139
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 2.0
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 244 IVDLICTLCDNQ-MDNLNTLKDHLVKIHNKTIYSDIKDHILQF-----KLKKG-DVFDCA 402
I L C C+N+ + N +H +H I + D+I+ K+K + F C
Sbjct: 92 IKSLQCLFCNNEGLLNRQEWFEHSFHVHGLNI--GLADNIVYINRLLEKIKNELESFRCL 149
Query: 403 MCTSTYETFKMLKQHMN 453
C + K+L++HMN
Sbjct: 150 CCHVPCKNKKLLREHMN 166
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 286 NLNTLKDHLVKIHNKTIYSDIKDHILQFKLKKG 384
N+ + +++++ +H I D+KD K K+G
Sbjct: 480 NITSFRENMINVHLSNIQCDLKDVNYYIKRKQG 512
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 3.5
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = +1
Query: 211 FDMTEYNVKLDIVDLICTLCDNQMDNLNTLKDHLVKIHNKTIYSDIKDHILQFKLKKGDV 390
F+ T YN+KL I++ + + D LNTL + L +++ I D I +
Sbjct: 1335 FEETTYNIKLSIINQLHAM-DLLRPLLNTLVEILNLSYDRPINVDKYPKIDYNLMDYSSA 1393
Query: 391 FDCAMCTSTYETFKMLKQHMNKHYSNY 471
D C + + ++ L+ H++ +Y
Sbjct: 1394 TDRIRCLAIHIYYQCLR-HLSSSVRSY 1419
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 16 TTQDKMKHRENLQTILNYSNATPFKNKSLLGFICGYCEAAYPDPSDLRQHTVTDHKKERL 195
T K +H ++ + + S P ++S FIC YC + S L++H + ERL
Sbjct: 394 TPPSKRRHIDDADLVFHSS---PLLSRSR--FICCYCTKPFLSISKLQEHESSCSHVERL 448
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +1
Query: 241 DIVDLICTLCDNQMDNLNTLKDHLVKIHNKTIYSDIKDHILQF 369
++ + C CD+ L L H + HN Y + + L F
Sbjct: 54 EVHEFCCLFCDSTFTCLKDLWSHCKEAHNFDFYQVKQQNNLDF 96
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 412 STYETFKMLKQHMNKH 459
S+ E FKMLK+H++ H
Sbjct: 674 SSSEIFKMLKEHLSGH 689
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,341
Number of Sequences: 5004
Number of extensions: 37093
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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