Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O24
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 34 0.070
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361... 33 0.16
09_02_0366 + 7941550-7942161,7942230-7942775 31 0.66
12_02_1040 + 25616967-25617276,25618042-25618163,25618397-256186... 29 1.5
07_03_1018 + 23326465-23326493,23326679-23327465 29 2.0
05_02_0067 + 6298232-6298294,6298532-6299068 29 2.6
05_01_0143 - 944169-947273 28 3.5
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 28 4.6
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 28 4.6
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 27 6.1
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 27 6.1
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 27 6.1
09_02_0226 - 6007656-6008063,6012166-6012678 27 8.1
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 27 8.1
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 27 8.1
02_04_0319 - 22006550-22006952,22007260-22007441,22007522-220077... 27 8.1
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 27 8.1
>01_07_0359 - 43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 33.9 bits (74), Expect = 0.070
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 142 DPSDLRQHTVTDHKKERLDFKSTFDMTEYNVKLDIVD--LICTLCDNQMDNLNTLK 303
D +D+++HTV DH K RLD F + +DI++ L+ + +N+ D++N LK
Sbjct: 901 DDNDMQEHTVADHSKHRLD--KAFAV------IDIMNSALLLVVQNNETDHINILK 948
>10_01_0330 +
3614562-3614574,3614676-3615118,3617700-3617825,
3618379-3618786,3618871-3619311,3619399-3619779
Length = 603
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 142 DPSDLRQHTVTDHKKERLDFKSTFDMTEYNVKLDIV 249
DPS+ + H VTD K++ ++ + D EYN L ++
Sbjct: 161 DPSNKKMHIVTDGKRQIVEVDNVIDEEEYNHNLHVM 196
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 30.7 bits (66), Expect = 0.66
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 391 FDCAMCTSTYETFKMLKQHMNKHYSNY 471
F CA+C T+ F ++ HM H S Y
Sbjct: 188 FSCAVCNKTFNRFNNMQMHMWGHGSQY 214
>12_02_1040 +
25616967-25617276,25618042-25618163,25618397-25618623,
25618708-25618885,25619054-25619197,25619448-25619669
Length = 400
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 325 NKTIYSDIKDHILQFKLKKGDVFDCAMCTST-YETFKMLKQHMNKHY 462
N I DI DH + K + D+ D A C Y T LKQH+ KHY
Sbjct: 154 NLNIPKDIPDHSSR-KGARTDLPDRACCVVVEYLTGGTLKQHLIKHY 199
>07_03_1018 + 23326465-23326493,23326679-23327465
Length = 271
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 208 TFDMTEYNVKLDIVDLICTLCDNQMDNLNTLKDHLVKIHN 327
T +T+ ++DL+ LCD +D D V IHN
Sbjct: 37 THQLTDLPPVTTLLDLLLPLCDLSVDGFGLADDRTVVIHN 76
>05_02_0067 + 6298232-6298294,6298532-6299068
Length = 199
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 397 CAMCTSTYETFKMLKQHMNK-HYSNYVCGKC 486
CA C+ T E +H+ HY ++VCG C
Sbjct: 78 CACCSVTEECTAAYIRHIRAAHYGDWVCGLC 108
>05_01_0143 - 944169-947273
Length = 1034
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +1
Query: 127 EAAYPDPSDLRQHTVTDHKK---ERLDFKSTFDMTEYNVKLDIVDLICTLCDNQMDNLNT 297
E A D S +Q+TV H+K ERL S+ D ++N K + + ++ D + N+
Sbjct: 541 EIASDDGSSKQQYTVQSHEKPILERLHHISSNDPGDHNAKKEENEQDLSISDESISEGNS 600
Query: 298 LKDHLVKIHNKTIYSD 345
+ + K N I +D
Sbjct: 601 -EQKINKAGNSCITAD 615
>09_06_0317 - 22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 142 DPSDLRQHTVTDHKKERLDFKSTFDMTEYNVKLDIVDLICTLCDNQMDNLNTL-KDHLVK 318
D S Q++ + D S ++ E+ V D +IC LC D++ ++ KD+
Sbjct: 942 DRSHEVQNSALESASSVADLSSEEEVCEFMVPADESQIICALCGESFDDIYSIEKDNW-- 999
Query: 319 IHNKTIYSD 345
++ +Y D
Sbjct: 1000 MYKDAVYFD 1008
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 391 FDCAMCTSTYETFKMLKQHMNKHYSNY 471
F C +C T+ + L+ HM H S Y
Sbjct: 163 FSCPVCRKTFNRYNNLQMHMWGHGSQY 189
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 56 RF*IIPMRRRSRIN-HSSALYVVTVKRLTLTL 148
RF IP+ + + HS ALY+ T++++T L
Sbjct: 816 RFDSIPLSKSFHVQYHSEALYLATIRKITAAL 847
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = +1
Query: 241 DIVDLICTLCDNQMDNLNTLKDHLVKIHNKTIYSDIKDHILQFK---LKKGDVFDCAMCT 411
DI C C+ + HL+ H + + + +F + K F+C +C
Sbjct: 308 DINSYECQQCNLTFHGQSAYAHHLITFHKVSSKRRKSNKVSKFGEPVIGKDGKFECPVCN 367
Query: 412 STYETFKMLKQHMNKH 459
T+E H+ H
Sbjct: 368 KTFEEQSRYFGHIGSH 383
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 27.5 bits (58), Expect = 6.1
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Frame = +1
Query: 88 KNKSLLGFICGYCEAAYPDPSDLRQHTVTDHKKERLDFKSTFDMTEYNVKLDIVDLICTL 267
+++ + + C +C +R H V HK+E LD KS + + D C
Sbjct: 7 QHRDIRRYKCEFCTVVRSKKCLIRAHMVAHHKEE-LD-KSEIYKSNGEKVVHEGDHTCQE 64
Query: 268 CDNQMDNLNTLKDHLVKIHNKTIY----SDI------KDHILQFKLK-KGDVFDCAM--C 408
C LK H+ ++ + D KDH+ + LK +G +F C+M C
Sbjct: 65 CGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDHLNRHMLKHQGKLFTCSMDGC 124
Query: 409 TSTYETFKMLKQHMNKHYSNYVCGK 483
+ +++H+ + + + K
Sbjct: 125 GRKFSIKANMQRHVKEIHEDETATK 149
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 391 FDCAMCTSTYETFKMLKQHMNKHYSNY 471
F C +C T+ + L+ HM H S Y
Sbjct: 155 FACPVCCKTFSRYNNLQMHMWGHGSQY 181
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 384 TLFQFKLEYMVLNITVNRFIMNFN*MVFKR--V*IIHLIVA*SAD*VDDIQFHIVFC-HI 214
TL F L +L T I N+ + + V I+HLI A + DI FC H
Sbjct: 227 TLQHFSLLSKILQCTNVEIISNYLFQLLQSPCVSILHLISLMIAAMIYDI-----FCVHH 281
Query: 213 ESGFKVETFFLMVCY 169
+GFK+ +L VC+
Sbjct: 282 LNGFKIPEIYLTVCF 296
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 CTLCDNQMDNLNTLKDHLVKIH-NKTIYSDIKDHILQFKLKKGDVFDCAMCTSTYETFKM 435
C C+ D T D + I N +I S +K+ L D F C C S E K
Sbjct: 182 CLRCETVTDRDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKR 241
Query: 436 LK 441
+K
Sbjct: 242 MK 243
>02_04_0319 -
22006550-22006952,22007260-22007441,22007522-22007704,
22008144-22008242,22008999-22009115,22010476-22010739
Length = 415
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 259 CTLCDNQMDNLNTLKDHLVKIH-NKTIYSDIKDHILQFKLKKGDVFDCAMCTSTYETFKM 435
C +CD T D + + N ++ S +K L D F C C+S E K
Sbjct: 230 CLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKR 289
Query: 436 LK 441
+K
Sbjct: 290 MK 291
>02_03_0121 +
15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 142 DPSDLRQHTVTDHKKERLDFKSTFDMTEYNVKL 240
DPS+ + H V D K+ + + D EYN L
Sbjct: 644 DPSNKKMHIVRDGKRRIVGVDNVVDEEEYNSNL 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,931
Number of Sequences: 37544
Number of extensions: 218163
Number of successful extensions: 537
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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