Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O24
         (488 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.8  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   2.4  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    23   4.2  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    23   4.2  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    23   7.4  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 280 SDCRIECRLSRRYPISHCILSYRKWI*SRDVLSYGLLR 167
           +DC  +  L R   ++  ++ YRKWI  +D     L+R
Sbjct: 551 NDCNRQSILGRIIRVTDEVIEYRKWI--KDTFEDKLIR 586


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 169 VTDHKKERLDFKSTFDMTEYNV 234
           + +H+KE  DF++    TE N+
Sbjct: 690 IQEHEKELADFRAELKQTEANI 711


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 112 ICGYCEAAYPDPSDLRQHTVTDH 180
           +C YC A+Y     LR H    H
Sbjct: 552 LCPYCPASYSRIDTLRSHLRIKH 574


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 112 ICGYCEAAYPDPSDLRQHTVTDH 180
           +C YC A+Y     LR H    H
Sbjct: 528 LCPYCPASYSRIDTLRSHLRIKH 550


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 391 FDCAMCTSTYETFKMLKQHMN-KH 459
           F+C +C +TY     L+ H   KH
Sbjct: 524 FECPLCRATYTRSDNLRTHCKFKH 547


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,171
Number of Sequences: 2352
Number of extensions: 9521
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)