Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O23
(231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 40 3e-05
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 0.44
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 1.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 2.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 23 4.1
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 23 5.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 23 7.2
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 23 7.2
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 22 9.5
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ... 22 9.5
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 22 9.5
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 40.3 bits (90), Expect = 3e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 109 TFATSQALGKRVKTFAIYRWNPGRAATKKPYTQNFEVDL 225
T A Q+ G+ +KTF IYRWNP + KP Q + VDL
Sbjct: 10 TSANPQSQGENLKTFEIYRWNPEKPEV-KPKLQKYTVDL 47
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 0.44
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 83 PLVPLGSCVLSLRHRLWG 136
P+VPL S + ++ H LWG
Sbjct: 144 PMVPLSSLIKTIPHGLWG 161
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 15 LTKYVLIFYE*IKTLHNAVAEVDRWYLWAVAYFRYVTGSGETCQDLRHIPLE 170
++K ++ F E I+ ++ + RW+L V + S E C+ + ++ E
Sbjct: 2224 VSKLLISFIEIIRVRMASLGDQRRWFLSVVVQLLEKSSSFELCEHILNVTKE 2275
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 81 DRWYLWAVAYFRYVTGSGETCQ-DLRHIPLES 173
D W+ + FRY GET + DL +I S
Sbjct: 633 DMWFTLVINRFRYSVDLGETLEVDLENIAKNS 664
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 55 HYIMPLLRLTAGTFGQLRTFATSQALGKRVK 147
H PL+ + A +F ++ +F + +G RVK
Sbjct: 680 HIFHPLVFVQAHSFPKIDSFILNSTVGPRVK 710
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 124 QALGKRVKTFAIYRWNPGRAATKKPYTQNFEVD 222
QA+ K +KT +++ PG + T++ ++D
Sbjct: 398 QAIDKGIKTKSLFTITPGSEQVRATLTRDGQLD 430
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 129 SGETCQDLRHIPLESGTSRDEK 194
+ E CQ L +PL +G + DE+
Sbjct: 263 ASEDCQTLVPLPLHAGLTVDEQ 284
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 106 RTFATSQALGKRVKTFAIYRWNPGRAATKKP 198
R+F + A+GK + A ++ GR AT P
Sbjct: 1024 RSFRSETAVGKIFRYAARFQRESGRPATYNP 1054
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = -2
Query: 170 FQRYMAKVLTRFPRACDVAKVRNCPKVPAVNL 75
F R++ RFP + + C K+P++ +
Sbjct: 773 FPRFIKVCFERFPTTMALLRNTVCEKLPSITM 804
>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 115 RKYATAQRYQRSTSATAL 62
RKYAT QR++ S+ L
Sbjct: 96 RKYATVQRFRMSSMRMGL 113
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 222 VNFEVLSVRLFRRGSSRIPTVYGEGLDTFPQS 127
VNF +S R +S PT+ G G P S
Sbjct: 449 VNFSTISPPPLSRSASISPTLSGSGSGLTPLS 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 931,874
Number of Sequences: 5004
Number of extensions: 15638
Number of successful extensions: 36
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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