Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O23
(231 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 34 0.019
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658... 28 1.2
11_01_0784 - 6557776-6557802,6557909-6557969,6558270-6558336,656... 27 2.8
10_01_0041 + 505155-506339 26 3.7
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379... 26 4.9
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 26 4.9
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 26 4.9
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 25 6.5
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 25 8.6
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 25 8.6
04_01_0027 - 360909-360926,361588-361644,361765-361854,361953-36... 25 8.6
03_05_0292 + 22846273-22846377,22847161-22847823 25 8.6
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 25 8.6
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 142 VKTFAIYRWNPGRAATKKPYTQNFEVDL 225
VK F +YRW+P A +++P+ Q++ VDL
Sbjct: 380 VKEFRVYRWSPD-APSRRPHLQSYHVDL 406
>11_01_0787 +
6578158-6579287,6579439-6580870,6581087-6581097,
6581525-6582125,6583981-6585054,6585745-6585873,
6585925-6585963
Length = 1471
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 94 FGQLRTFATSQALGKRVKTFAIYRWNPGRAAT 189
FG F T + K V+ + Y WN AAT
Sbjct: 458 FGSANDFGTMVQINKDVRRLSSYEWNDSVAAT 489
>11_01_0784 -
6557776-6557802,6557909-6557969,6558270-6558336,
6560630-6563309
Length = 944
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +1
Query: 55 HYIMPLLRLTAGT---FGQLRTFATSQALGKRVKTFAIYRWNPGRAATKK 195
H IM L L+A FG F T + K V+ + YRW A K
Sbjct: 497 HDIMRDLALSAAKEEKFGSANDFGTMVEIDKDVRRLSTYRWKDSTAPILK 546
>10_01_0041 + 505155-506339
Length = 394
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 201 VRLFRRGSSRIPTVYGEGLDTFPQSL 124
V + RR RIP +GEG D + L
Sbjct: 275 VEIIRRAKERIPEQFGEGSDRMVREL 300
>06_03_0022 -
15536811-15536899,15537485-15537664,15537706-15537982,
15538680-15538883,15539431-15539496,15539933-15539953,
15541622-15541731,15543244-15544236,15544928-15544955,
15545035-15545093,15545177-15545204,15545453-15545475,
15545784-15545853,15546980-15547033,15547127-15547169,
15548126-15548175
Length = 764
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 152 KVLTRFPRACDVAKVRNCPKV 90
K RFP+ CD NC KV
Sbjct: 496 KFAVRFPQPCDAESFLNCVKV 516
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -2
Query: 194 FFVAARPGFQRYMAKVLTRFPRACDVAKVRNC 99
FF R GF+ M V TR P ++ NC
Sbjct: 298 FFAPLRYGFEGSMILVTTRSPDVANLVASNNC 329
>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 87 WYLWAVAYFRYVTGSGETCQDLRHIPL 167
W+LWAV Y YV + +++P+
Sbjct: 947 WFLWAVLYLDYVEFGDKNVPIGKNVPI 973
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 219 NFEVLSVRLFRRGSSRIPTVYGEGLDTFPQSL*RSESTQLPKGTSGQPQQRH 64
N E+ S+ + + + E + FP SL + + P+ S QPQ+ H
Sbjct: 212 NLEISSLSPSMLIADYVGSPAAEPMRAFPASLTGATGSAFPQALSNQPQRPH 263
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -3
Query: 217 LRSFECKAFSSRLVPDSNG--IWRR 149
LRSF CK FS R NG WRR
Sbjct: 100 LRSFSCKDFSVRYFLWKNGGPDWRR 124
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 87 WYLWAVAYFRYV 122
W+LWAV Y YV
Sbjct: 347 WFLWAVLYLDYV 358
>04_01_0027 -
360909-360926,361588-361644,361765-361854,361953-362038,
362159-362219,362310-362480,362555-362701,362773-362910
Length = 255
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 99 PKGTSGQPQQRHYVMFLFTRRKLKRTS 19
P+G G PQ H V F RR+L+R S
Sbjct: 48 PEGVLGPPQGGHIVRLEF-RRRLERDS 73
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 208 FECKAFSSRLVPDSNGIW-RRS*HVSPEP 125
F C+ F+ +LVPD GI+ R + P P
Sbjct: 222 FVCQFFADQLVPDLRGIFLSRDQPIPPTP 250
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 96 WAVAYFRYVTGSGETCQDLRHIPLESGTSRD--EKALH 203
WA+ + + G+ C IPLE+ S D ++ +H
Sbjct: 252 WALGFCGDIIGADNPCSSAESIPLENIASLDLSDRCIH 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,999,892
Number of Sequences: 37544
Number of extensions: 104993
Number of successful extensions: 262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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