Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O23
         (231 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical pr...    42   6e-05
AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur s...    42   6e-05
U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical p...    27   1.4  
Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z69385-7|CAA93429.2|  508|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical
           protein F42A8.2 protein.
          Length = 298

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +1

Query: 115 ATSQALGKRVKTFAIYRWNPGRAATKKPYTQNFEVDLD 228
           A ++  G R+KTF IYR+NP  A   KP  Q F+VDLD
Sbjct: 44  AKTKKTGNRIKTFEIYRFNP-EAPGAKPTVQKFDVDLD 80


>AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur
           subunit of mitochondrialsuccinate dehydrogenase protein.
          Length = 297

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +1

Query: 115 ATSQALGKRVKTFAIYRWNPGRAATKKPYTQNFEVDLD 228
           A ++  G R+KTF IYR+NP  A   KP  Q F+VDLD
Sbjct: 43  AKTKKTGNRIKTFEIYRFNP-EAPGAKPTVQKFDVDLD 79


>U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical
           protein C33F10.12 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 36  FYE*IKTLHNAVAEVDRWYLWAVAYFRYVTGSGETCQDLRHIPLES 173
           FYE  K ++++    +  Y+W  + +   + S E   D+   P+E+
Sbjct: 124 FYEVFKNIYSSALGEENAYIWRTSIYLAASASAEFFADIFLAPMEA 169


>Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical
           protein T05F1.8 protein.
          Length = 393

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 36  FYE*IKTLHNAVAEVDRWYLWAVAYFRYVTGSGETCQDLRHIPLES 173
           FYE  K +++     +  Y+W  + +   + S E   D+   P+E+
Sbjct: 124 FYEVFKNIYSLSLGEENAYIWRTSIYLAASASAEFFADIFLAPMEA 169


>Z69385-7|CAA93429.2|  508|Caenorhabditis elegans Hypothetical
           protein ZK593.8 protein.
          Length = 508

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 27  VLIFYE*IKTLHNAVAEVDRWYLWAVAY 110
           +LI    I+ +HN + E D+ Y+ A+AY
Sbjct: 183 ILIEMGQIREMHNELVEADQCYVKALAY 210


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
           protein F47A4.5 protein.
          Length = 1071

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 191 FVAARPGF--QRYMAKVLTRFPRA--CDVAKVRNCPKVPAVNLSNGIM 60
           F AA   F  Q+    V+T+ P    C+++  ++C  VPA++  N  M
Sbjct: 45  FQAASQSFSSQKSNGNVITQQPGKLHCEISDPKSCSFVPAISTDNAQM 92


>Z81466-3|CAB03867.1|  593|Caenorhabditis elegans Hypothetical
           protein C09H6.3 protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 105 AYFRYVTGSGETCQDLRHIPLESGTSRDEKALH 203
           A+F Y+T     C+ L H  L+   + D   LH
Sbjct: 454 AFFAYITNKLNECKLLSHEVLDDSKAEDFFRLH 486


>Z81119-3|CAB03334.1|  550|Caenorhabditis elegans Hypothetical
           protein T10H4.4 protein.
          Length = 550

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 130 EPVT*RKYATAQRYQRSTSATALCNVFIHS*KIKT 26
           EPVT +K +TA   Q   SA  L NV I    +KT
Sbjct: 48  EPVTIKKPSTAVSCQLQVSAQELYNVEILCVMLKT 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,156,358
Number of Sequences: 27780
Number of extensions: 90490
Number of successful extensions: 244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)