Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O23
         (231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.21 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   4.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   4.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   4.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              19   8.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   8.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.21
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 5   EDSINEVRFNFLRVNKNIT 61
           E ++NE+ FN   VNK +T
Sbjct: 50  EQTLNELNFNLNYVNKGVT 68


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 2.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 120 VTGSGETCQDLRH 158
           V G GET +DL H
Sbjct: 449 VAGMGETIEDLLH 461


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 135  PQSL*RSESTQLPKGTSGQPQQR 67
            PQ   + +  Q P+  S QPQQ+
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQPQQQ 1527



 Score = 19.4 bits (38), Expect = 6.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 129  SGETCQDLRHIPLESGTSRDEKAL 200
            +G    +L    LE+G  RD++A+
Sbjct: 1280 NGSFLDNLIRSSLETGIPRDQRAM 1303


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 61  CNVFIHS*KIKTYFVNTV 8
           C +F+ +  ++  FVNT+
Sbjct: 301 CTIFLFAAMVEFAFVNTI 318


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 190 SSRLVPDSNGIWR 152
           S+ ++P  NG+WR
Sbjct: 48  SNDILPVCNGLWR 60


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 4.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 190 SSRLVPDSNGIWR 152
           S+ ++P  NG+WR
Sbjct: 86  SNDILPVCNGLWR 98


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 111 FRYVTGSGETCQDLRHIPLESGTSRDEK 194
           FR+     E C DL ++ +   T R +K
Sbjct: 4   FRHNGRDFEYCPDLDNVTMPETTPRRKK 31


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 6  RTVLTKYVLIFY 41
          RTVL K V +FY
Sbjct: 52 RTVLDKEVHVFY 63


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 19.0 bits (37), Expect = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 6  RTVLTKYVLIFY 41
          RTVL K V +FY
Sbjct: 52 RTVLDKEVHVFY 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,986
Number of Sequences: 438
Number of extensions: 1113
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3785850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)