Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O22
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   0.31 
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    26   2.2  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   3.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   5.1  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    25   5.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   6.7  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   6.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   8.9  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    24   8.9  

>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 SLYLCDYLFPGETPAEALLSVRELLDLQITEADV 266
           S  LC YLFP     E+L+++   L L++++ D+
Sbjct: 408 STILCPYLFPTNVRMESLINLELFLYLRLSQNDI 441


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 207 AEALLSVRELLDLQITEADVICDIETPADTSEFDAL 314
           AE ++ +RE+L  +     +IC IE     + FD++
Sbjct: 225 AEDVIHIREVLGEEGKNIKIICKIENQQGVNNFDSI 260


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 171 YLCDYLFPGETPAEALL 221
           YLCDYL  GE P   L+
Sbjct: 158 YLCDYLRSGEFPLTVLI 174


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 237 VVLSRKVTLQQAFHREINNHKDTEIP-RELT 148
           VVL+++V  +Q   R +NN KD   P R++T
Sbjct: 722 VVLAQQVGSRQIVERVVNNFKDESEPYRKMT 752


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 69  TMHCDALIDDNLLPEEKVCFNEP 137
           +MHC+ LI  + +P+E+  + +P
Sbjct: 221 SMHCEELILKDFIPKEEHTYTDP 243


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 135  PPRRVLVPVGSLYLCDYLFPGETPAEALLSVRELLDL 245
            PP    V    LYL  Y F G +P E  +   E++++
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKKDEIIEI 1135


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 79  VTLSLMIIFCLKRKYVSTSRH 141
           V LS++ I C K  YVS+ +H
Sbjct: 65  VILSILTIACFKIHYVSSPKH 85


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 LCDYLFPGETPAEALLSVRELLDLQITEAD 263
           +CDYLFP  T  + L ++ E  + ++ + +
Sbjct: 398 VCDYLFPSSTIPDGLPALIENFNARVDKVN 427


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 210 QQAFHREINNHKDTEIP 160
           Q+AFHR  N H DT  P
Sbjct: 61  QEAFHRLFNAHPDTMGP 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,261
Number of Sequences: 5004
Number of extensions: 29567
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)