Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O22
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 42 2e-04
08_01_0009 + 68825-68950,72571-72669,72841-72929,74971-75087,757... 42 2e-04
01_06_0071 + 26177698-26177796,26178449-26178553,26178636-261787... 29 1.2
04_01_0188 - 2208001-2208576,2211502-2211513,2212837-2212970,221... 29 1.6
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 29 2.2
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 28 2.9
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 28 2.9
06_01_0570 + 4026889-4027537,4028340-4028689,4029258-4029433,402... 27 5.0
05_04_0060 + 17576427-17578781 27 8.7
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 27 8.7
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Frame = +3
Query: 9 VKEAIAAVKQDIIRSLASRFTMHCDALIDD-------NLLPEE--KVCFNE-------P- 137
+ E I+ +K DII SL SR + D DD N L ++ +V F+E P
Sbjct: 290 IAEVISDLKLDIITSLRSRLDIILDEADDDSTTNNLENSLSQKATQVVFHELRVPYSFPF 349
Query: 138 PRRVLVP-VGSLYLCDYLFPGETPAEALLSVRELLDLQ 248
PRR+L+P + Y+CDYL ET +A+ +E++ L+
Sbjct: 350 PRRILIPWLAGSYICDYLQQSETTEDAMERCKEVMSLE 387
>08_01_0009 +
68825-68950,72571-72669,72841-72929,74971-75087,
75747-75906,76419-76549,76810-76906,77584-77877
Length = 370
Score = 41.9 bits (94), Expect = 2e-04
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Frame = +3
Query: 9 VKEAIAAVKQDIIRSLASRFTMHCDALIDD-------NLLPEE--KVCFNE-------P- 137
+ E I+ +K DII SL SR + D DD N L ++ +V F+E P
Sbjct: 189 IAEVISDLKLDIITSLRSRLDIILDEADDDSTTNNLENSLSQKATQVVFHELRAPYSFPF 248
Query: 138 PRRVLVP-VGSLYLCDYLFPGETPAEALLSVRELLDLQ 248
PRR+L+P + Y+CDYL ET +A+ +E++ L+
Sbjct: 249 PRRILIPWLAGSYICDYLQQSETMEDAMERCKEVMSLE 286
>01_06_0071 +
26177698-26177796,26178449-26178553,26178636-26178742,
26179466-26179620,26180140-26180228,26180353-26180875,
26181568-26181642,26181802-26182022,26182657-26182739,
26182826-26182937,26183206-26183280,26183346-26183525
Length = 607
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Frame = +3
Query: 75 HCDALIDDNLLPEEKVCFNEPPRRVLVPVGSLYLCDYLFPGETPAEALLSVRELLDLQIT 254
H L + +LP + N ++ +P+ S LCD + L ++
Sbjct: 264 HLQTLSQNEVLPTKISVKNSLDKKGRIPIISAKLCDTNEDNTVKVHVVFGSPNFLQFKVV 323
Query: 255 EADVIC-DIETPADTSEFDALDRDNSSEELLASPQEAS 365
E D C DI A+ E D + E L +A+
Sbjct: 324 ELDDTCKDINLVAEYDELAKQDMVSPQERNLEQEAKAN 361
>04_01_0188 -
2208001-2208576,2211502-2211513,2212837-2212970,
2213147-2213262,2214844-2215075,2218483-2218548,
2219661-2219750,2221340-2221388
Length = 424
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 57 ASRFTMHCDALIDDNLLPEEKVCFNEPPRRVL-VPVGSLYLCDYLFPGETPAEALLSVRE 233
A+RF +HCD+ + ++P K + P+ P+GS+ + + F G P + +
Sbjct: 208 ANRFYIHCDSALVGLMMPFIKQVNPKAPKLTFKKPIGSICISGHKFIG-CPIPCGVLITR 266
Query: 234 LLDL 245
L+D+
Sbjct: 267 LMDI 270
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 110 RQKIIINESVTMHSET*RERSYNVLFNRCNGF 15
R+KIIIN+S+ ++ SYN L+N NGF
Sbjct: 447 RKKIIINDSIRHFNKL----SYNDLYNATNGF 474
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 246 QITEADVICDIETPADTSEFDALD 317
+I DVIC+IET T EF++L+
Sbjct: 178 KIEVGDVICEIETDKATLEFESLE 201
>02_04_0622 -
24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 255 QLSVDRVVLSRKVTLQQAFHREINNHKDTEIPRELTHDVAAR 130
Q+ +DR L +T + A HR ++NH+ R L VA+R
Sbjct: 644 QMQMDRHYLD--MTYRDASHRNLHNHQVPHFQRPLRKQVASR 683
>06_01_0570 +
4026889-4027537,4028340-4028689,4029258-4029433,
4029593-4029659,4029746-4029780,4030084-4030186,
4031606-4031699,4031764-4031813,4031889-4032000,
4032275-4032401,4032491-4032941
Length = 737
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 42 IIRSLASRFTMHCDALIDDNLLPEEKVCFNEP 137
+ LA + T D+NL+P E C+ EP
Sbjct: 706 LFHGLAGKLTAKAVISCDENLIPPEFTCWKEP 737
>05_04_0060 + 17576427-17578781
Length = 784
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 231 ELLDLQITEADVICDIETP-ADTSEFDAL 314
+ D+ +T A V+CD ETP TS +A+
Sbjct: 393 DFFDVNVTGAVVVCDTETPLPPTSSINAV 421
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 26.6 bits (56), Expect = 8.7
Identities = 24/95 (25%), Positives = 36/95 (37%)
Frame = +3
Query: 84 ALIDDNLLPEEKVCFNEPPRRVLVPVGSLYLCDYLFPGETPAEALLSVRELLDLQITEAD 263
A I LLP C PPR L+ V S + L A L+ R + E +
Sbjct: 13 AAISGALLPHAVACHRLPPRPQLLAVSSSFRRLSLTASPRRASRLVP-RADASAEAGEPE 71
Query: 264 VICDIETPADTSEFDALDRDNSSEELLASPQEASQ 368
+ E A + DA + +E +A +E +
Sbjct: 72 PAAEAEAEAVAASTDAEVEEGEAEAAVAVAEEEQE 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,336,943
Number of Sequences: 37544
Number of extensions: 183543
Number of successful extensions: 441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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