Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O21
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   2.8  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    25   4.9  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    24   6.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    24   8.5  

>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 146 SDNWARARGTVTHLLYYYYDIF 81
           S NWAR    +T+ LY Y  ++
Sbjct: 234 SINWARILSQITYYLYSYLSVY 255


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 265 MAEIVLSISRALKSHETY 212
           ++EI+L + RALK+H+ Y
Sbjct: 246 LSEILLMLPRALKAHQWY 263


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 114 YTFIILLLRYFCSFLATFYSLRFIIIL 34
           Y+ I LL   F  +L TFYSLR I +L
Sbjct: 273 YSIIYLLNSMF--YLLTFYSLRAITML 297


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 147 VRQLGKSERDGYTFIILLLRYFCSFLATFY 58
           V  +G S     TFI LLLRYF       Y
Sbjct: 465 VHIIGPSGSGKSTFISLLLRYFSPTYGNIY 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,184
Number of Sequences: 5004
Number of extensions: 21984
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)