Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O21
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0108 - 5361431-5362405                                           29   1.1  
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364...    26   7.9  
05_07_0295 - 29051375-29052135,29053368-29053533                       26   7.9  
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445...    26   7.9  

>10_02_0108 - 5361431-5362405
          Length = 324

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 128 LLPSCRTETDDVSVPRRF*LVNPLSSQFIRLVR 226
           LL  C T  D +S+PR F + NP+S + + LVR
Sbjct: 128 LLLLCSTFNDRMSIPRNFVVANPVSGRSV-LVR 159


>11_06_0460 +
           23836034-23836083,23836175-23836318,23836397-23836480,
           23836695-23836838,23836928-23836978,23837070-23837150,
           23837366-23837509,23837599-23837649,23837738-23838056,
           23839994-23840062,23840378-23840698,23841218-23841583,
           23842241-23842304,23842569-23842690
          Length = 669

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 210 SYVSCDFNALDILKTISAIELNVMDTIYDN 299
           +Y+SCD   +D   T S+  L    TIY+N
Sbjct: 602 TYLSCDTYNIDCATTYSSERLQFKITIYNN 631


>05_07_0295 - 29051375-29052135,29053368-29053533
          Length = 308

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 216 RMNCELKGLTNQKRRGTLTSSVSVRQ 139
           R+ C+LK + + K++ T+   V +RQ
Sbjct: 40  RLGCKLKQMFDAKKQNTVADGVEIRQ 65


>04_04_0416 +
           25042937-25043350,25044038-25044238,25044343-25044525,
           25044975-25045084,25045317-25045376,25045620-25045911,
           25046780-25046967,25047275-25048149,25048846-25049805,
           25050025-25050068,25050860-25050925,25051176-25051364
          Length = 1193

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 134 PSCRTETDDVSVPRRF*LVNPLSSQFIRLVRL*RSR 241
           PS  +E++DVS+P    LV PL+   ++ +RL R+R
Sbjct: 776 PSGNSESNDVSLPPGRRLVVPLNICVVQGMRLVRAR 811


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,422,591
Number of Sequences: 37544
Number of extensions: 123545
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)