Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O21
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical p...    34   0.027
AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical ...    34   0.027
Z80215-8|CAB02275.1|  381|Caenorhabditis elegans Hypothetical pr...    30   0.44 
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    28   1.8  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   2.4  
AC006791-7|AAF60740.2|  448|Caenorhabditis elegans Hypothetical ...    28   2.4  
AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical...    27   5.4  
AF040661-8|AAG24222.1|  327|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z46267-16|CAO78720.1|  576|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z46267-4|CAD45594.1|  517|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z46267-3|CAA86421.3|  522|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    26   9.5  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    26   9.5  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    26   9.5  

>Z81038-17|CAB76409.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -3

Query: 268 SMAEIVLSISRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITT 89
           S  EI + I +    H+   +  + + Q    +H NIVRL  +  ++ EGR+     +  
Sbjct: 49  SNQEIDIVIKKTWPRHKGCPMEVKILGQLGKLKHRNIVRLLYSYQKQHEGRI----CLAL 104

Query: 88  IFLFVPCNILQF 53
           IF ++P N+ QF
Sbjct: 105 IFEYIPLNLYQF 116


>AL032656-5|CAB76732.1|  381|Caenorhabditis elegans Hypothetical
           protein Y106G6E.1 protein.
          Length = 381

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -3

Query: 268 SMAEIVLSISRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTITT 89
           S  EI + I +    H+   +  + + Q    +H NIVRL  +  ++ EGR+     +  
Sbjct: 49  SNQEIDIVIKKTWPRHKGCPMEVKILGQLGKLKHRNIVRLLYSYQKQHEGRI----CLAL 104

Query: 88  IFLFVPCNILQF 53
           IF ++P N+ QF
Sbjct: 105 IFEYIPLNLYQF 116


>Z80215-8|CAB02275.1|  381|Caenorhabditis elegans Hypothetical
           protein C36B1.10 protein.
          Length = 381

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = -3

Query: 271 NSMAEIVLSISRALKSHETYEL*TQGINQSETTRHANIVRLCPTTGQEREGRLHIYYTIT 92
           N   EIV  I +    H+   L  + + +    +H NIVRL  +  ++ EGR+     + 
Sbjct: 50  NHQMEIV--IKKTWPRHKGCPLEVKILGKLGKLKHKNIVRLLFSYQKQHEGRI----CLG 103

Query: 91  TIFLFVPCNILQF 53
            IF ++P N+ QF
Sbjct: 104 LIFEYIPMNLHQF 116


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 114 YTFIILLLRYFCSFLATFY 58
           +TF++LLL YFC+ + ++Y
Sbjct: 4   FTFVVLLLFYFCNTVFSYY 22


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -3

Query: 166 ANIVRLCPTTGQEREGRLHIYYTITTIFLFVPCNILQFTFYNYS 35
           +N++R+C    + + G +++   +  IFL     ++ + FYN++
Sbjct: 39  SNMIRICVDPPECKTGEVYVIIALVIIFLGFIGFLIGYNFYNWT 82


>AC006791-7|AAF60740.2|  448|Caenorhabditis elegans Hypothetical
           protein Y4C6A.1 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -1

Query: 186 NQKRRGTLTSSVSVRQLGKSERDGYTF--IILLLRYFCSFLATFYSLRFIIILTNYYKKK 13
           N+  R  + S + +++ GK + D      +++    +  F  T  S   I  L NYY K 
Sbjct: 111 NKVNREIILSLIPIQEEGKEDEDKIRTRNVVIKRAGYLFFCETTRSFDSIFELINYYMKN 170

Query: 12  GASC 1
             SC
Sbjct: 171 TGSC 174


>AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical
           protein F53C3.1 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 258 KSF*VYLER*SRTRRMNCELKGLTNQKRRGTLTSSVSVRQLGKSERDGYTFIILLL 91
           K F + +E+   TR+ +     +   K  GT      +   GK +++GY FI++ L
Sbjct: 48  KQFAMKVEKKMDTRKHSKLKMEIAILKLVGTCKHFTKIEDRGKKDKEGYFFIVMQL 103


>AF040661-8|AAG24222.1|  327|Caenorhabditis elegans Hypothetical
           protein W10G11.16 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 90  RYFCSFLATFYSLRFIIILTNYY 22
           RY  +F   FY L FI+ L  YY
Sbjct: 290 RYLDNFCRVFYPLSFILFLLMYY 312


>Z46267-16|CAO78720.1|  576|Caenorhabditis elegans Hypothetical
           protein F49E2.2c protein.
          Length = 576

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 80  QKYRSNSIINV*PSLSLLPSCRTETDDVS 166
           Q  RSNS  +V  +L  LPS R  T+DVS
Sbjct: 304 QDSRSNSTSSVATTLEDLPSSRRLTNDVS 332


>Z46267-4|CAD45594.1|  517|Caenorhabditis elegans Hypothetical
           protein F49E2.2b protein.
          Length = 517

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 80  QKYRSNSIINV*PSLSLLPSCRTETDDVS 166
           Q  RSNS  +V  +L  LPS R  T+DVS
Sbjct: 250 QDSRSNSTSSVATTLEDLPSSRRLTNDVS 278


>Z46267-3|CAA86421.3|  522|Caenorhabditis elegans Hypothetical
           protein F49E2.2a protein.
          Length = 522

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 80  QKYRSNSIINV*PSLSLLPSCRTETDDVS 166
           Q  RSNS  +V  +L  LPS R  T+DVS
Sbjct: 250 QDSRSNSTSSVATTLEDLPSSRRLTNDVS 278


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 111 TFIILLLRYFCSFLATFYSLRFIIILTNYYKKKGAS 4
           T +I+L+    SFL    +L F+++   +YK +  S
Sbjct: 201 TNMIMLVLILTSFLIPIVTLSFVLVTLCFYKNRSES 236


>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -1

Query: 156 SVSVRQLGKSERDGYTFIILLLRYFCSFLATFYS------LRFIIILTNYYKKKGASC 1
           S+S  +L +  R  Y  I+L L  F   LA F S      L   + LTN+Y+K+G  C
Sbjct: 410 SISDEELPRKLRKTYESILLPLESFYHTLA-FNSEFCDDLLMSNLRLTNWYRKQGCRC 466


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -1

Query: 156 SVSVRQLGKSERDGYTFIILLLRYFCSFLATFYS------LRFIIILTNYYKKKGASC 1
           S+S  +L +  R  Y  I+L L  F   LA F S      L   + LTN+Y+K+G  C
Sbjct: 410 SISDEELPRKLRKTYESILLPLESFYHTLA-FNSEFCDDLLMSNLRLTNWYRKQGCRC 466


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -1

Query: 156 SVSVRQLGKSERDGYTFIILLLRYFCSFLATFYS------LRFIIILTNYYKKKGASC 1
           S+S  +L +  R  Y  I+L L  F   LA F S      L   + LTN+Y+K+G  C
Sbjct: 410 SISDEELPRKLRKTYESILLPLESFYHTLA-FNSEFCDDLLMSNLRLTNWYRKQGCRC 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,885,903
Number of Sequences: 27780
Number of extensions: 122046
Number of successful extensions: 341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)