Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O21
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   4.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -1

Query: 294 HILYPSRSIRWLKSF*VYLER*SRTRRMNCELKGLTNQKRRGTLTS 157
           HIL P++   +++   +YL++  +    +   +  +NQ+R G  +S
Sbjct: 81  HILSPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSS 126


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 109 IYYTITTIFLFVPCNILQFTFYN 41
           I Y+  + F ++PC I+ F +YN
Sbjct: 344 IIYSSLSSF-YIPCIIMVFLYYN 365


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 172 RHANIVRLCPTTGQEREGRLHIYYTITTIFL 80
           RH +IVRL    G      L ++   TTI L
Sbjct: 109 RHKHIVRLVTAIGDAYGVALLLHMLTTTITL 139


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -3

Query: 136 GQEREG-RLHIYYTITTI 86
           G  R G R  +YYT+TTI
Sbjct: 130 GSGRMGYRALLYYTVTTI 147


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 85  FLFVPCNILQFTFYNYSY 32
           F+FV   +L++   NY+Y
Sbjct: 312 FVFVFAALLEYAAVNYTY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,294
Number of Sequences: 438
Number of extensions: 2007
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)