Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O20
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   107   8e-25
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   1.4  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    24   7.2  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    24   9.6  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    24   9.6  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  107 bits (256), Expect = 8e-25
 Identities = 46/83 (55%), Positives = 63/83 (75%)
 Frame = +3

Query: 138 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 317
           E+TF+ VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 318 VKYMSSGPVVPMVWEGLNVVKTG 386
           V +M+SGPV  M+WEG   VKTG
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTG 86


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 223 KPFFSKRSMIVPTRPR*TPSGLT 155
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 146 GSFTLISHSIILNYSHHGSNLSYLVKYHLFNLMEIK 39
           G+F  I+H+++  +  HG    YLV    F+   +K
Sbjct: 301 GNFDEIAHAMLSIFEKHGVKCRYLVLSPAFDGATVK 336


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 356 NHGNNRSRTHVFYKTREK 303
           N GN  SR H+ YK +++
Sbjct: 156 NRGNKYSRKHITYKPKDE 173


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 363 PPKPWEQPVQNSCILQDQGKTG 298
           PPKP  +PV NS +L      G
Sbjct: 108 PPKPQFEPVANSQVLNKDVNNG 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,758
Number of Sequences: 5004
Number of extensions: 28921
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)