Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O20
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835...   122   8e-29
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416...   120   4e-28
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406...   115   2e-26
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215...   113   3e-26
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078     30   0.56 
10_08_1046 + 22542074-22544749,22544837-22545544                       28   2.2  
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036...    27   3.9  
04_03_0320 - 14316934-14318550                                         27   5.2  
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225...    27   6.9  

>07_03_0445 -
           18281715-18281832,18282274-18282505,18283486-18283534,
           18283733-18283783
          Length = 149

 Score =  122 bits (295), Expect = 8e-29
 Identities = 54/83 (65%), Positives = 67/83 (80%)
 Frame = +3

Query: 138 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 317
           E++F+M+KPDGVQRGL+G II RFEKKGF L G+KF+       QQHY+DL+ +PFFPGL
Sbjct: 2   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61

Query: 318 VKYMSSGPVVPMVWEGLNVVKTG 386
           V+Y+ SGPVV MVWEG +VV TG
Sbjct: 62  VEYIISGPVVAMVWEGKDVVATG 84


>05_07_0347 -
           29440541-29440664,29440908-29441020,29441522-29441689,
           29442341-29442391,29442518-29442555,29442885-29442978
          Length = 195

 Score =  120 bits (289), Expect = 4e-28
 Identities = 53/87 (60%), Positives = 66/87 (75%)
 Frame = +3

Query: 126 ADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 305
           A + ERTF+ +KPDGVQRGL+  I+ RFE+KGFKLV +K V PS+E  Q+HY DL  RPF
Sbjct: 42  AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 101

Query: 306 FPGLVKYMSSGPVVPMVWEGLNVVKTG 386
           F GL  ++SSGPV+ MVWEG  V+K G
Sbjct: 102 FNGLCDFLSSGPVLAMVWEGEGVIKYG 128


>10_08_0945 -
           21738643-21738760,21740056-21740287,21740582-21740630,
           21740720-21740776
          Length = 151

 Score =  115 bits (276), Expect = 2e-26
 Identities = 50/83 (60%), Positives = 65/83 (78%)
 Frame = +3

Query: 138 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 317
           E+TF+M+KPDGVQRGL+G +I RFEKKGF L  +K +   +   ++HY+DL+S+PFF GL
Sbjct: 4   EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63

Query: 318 VKYMSSGPVVPMVWEGLNVVKTG 386
           V+Y+ SGPVV MVWEG  VV TG
Sbjct: 64  VEYIVSGPVVAMVWEGKQVVSTG 86


>12_02_0695 +
           22220054-22220056,22221226-22221276,22221415-22221501,
           22222064-22222144,22222241-22222353,22222482-22222531,
           22222790-22222857
          Length = 150

 Score =  113 bits (273), Expect = 3e-26
 Identities = 50/80 (62%), Positives = 63/80 (78%)
 Frame = +3

Query: 138 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 317
           E++++M+KPDGVQRGLVG II RFEKKGF L GLK     ++L Q+HY DL  +PFFPGL
Sbjct: 3   EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62

Query: 318 VKYMSSGPVVPMVWEGLNVV 377
           ++Y++SGPVV M WEG  VV
Sbjct: 63  IEYITSGPVVCMAWEGNGVV 82


>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
          Length = 574

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
 Frame = +2

Query: 245 RLALGRVAAATLQ*LSVPP------VFPWSCKIHEFWT-GCSHGLGGPE 370
           RLALG V    LQ  ++PP        PW    H+FW  G   G   PE
Sbjct: 442 RLALGSVVDVVLQNTAIPPPNGRSETHPWHLHGHDFWVLGYGEGKFVPE 490


>10_08_1046 + 22542074-22544749,22544837-22545544
          Length = 1127

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 120 GVADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASR 299
           G   + ER   +VK +G   G        FE KG    G   +WP ++ +  H  +L S+
Sbjct: 189 GHGPKMERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSK 247

Query: 300 PFFP 311
           P+ P
Sbjct: 248 PWRP 251


>01_06_0986 -
           33602714-33602741,33603037-33603146,33603401-33603601,
           33604605-33604697,33604937-33605182,33606007-33606372,
           33606459-33606599,33607170-33607526
          Length = 513

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 291 ASRPFFPGLVKYMSSGPVVP 350
           ASRPF PGL++     PV+P
Sbjct: 22  ASRPFLPGLLEAALRAPVLP 41


>04_03_0320 - 14316934-14318550
          Length = 538

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 348 EQPVQNSCILQDQGKTGGTLSHCNVA-AATLPRARR 244
           ++P QN C+    G  GG +  C+   +AT P   R
Sbjct: 449 DKPRQNCCVRSPDGLVGGVVMTCHAGWSATSPSCSR 484


>07_03_0961 -
           22921761-22921850,22922204-22922338,22922409-22922531,
           22922621-22922707,22922780-22922831,22922939-22923063,
           22923724-22923932,22924206-22924407,22924526-22924630,
           22925353-22925414,22925755-22925944,22926017-22926112,
           22926203-22926305,22927019-22927122,22927264-22927395,
           22928257-22928343,22929121-22929206,22929291-22929383,
           22932197-22932284,22932402-22932514,22932621-22932743,
           22934153-22934204,22934365-22934408,22934498-22934571,
           22934655-22934746,22935594-22935661,22937146-22937221,
           22937323-22937679
          Length = 1055

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -3

Query: 173 NTIGLNHKKGSFTLISHSIILNYSHHGSNLSYLVKY------HLFNLMEIK*SEIR 24
           NT+ +N  K    ++   I    SH+ +NL  LV Y      +L  L+E K S++R
Sbjct: 258 NTLLVNPNKEGLDILEELITFYSSHYSANLMQLVVYGKESLDNLQTLVENKFSDVR 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,481
Number of Sequences: 37544
Number of extensions: 198699
Number of successful extensions: 552
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)