Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O20
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...   118   1e-27
AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical ...    49   1e-06
AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical...    36   0.010
U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    26   8.1  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z22181-12|CAA80188.1|  161|Caenorhabditis elegans Hypothetical p...    26   8.1  
AY324109-1|AAP85302.1|  161|Caenorhabditis elegans LIN-52 protein.     26   8.1  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score =  118 bits (285), Expect = 1e-27
 Identities = 53/83 (63%), Positives = 66/83 (79%)
 Frame = +3

Query: 138 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 317
           ERTF+ +KPDGV RGLVG II RFE++G+KLV LK +  S+  L+ HY DL  +PFFP L
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLVALKQMTASKAHLEVHYQDLKDKPFFPSL 64

Query: 318 VKYMSSGPVVPMVWEGLNVVKTG 386
           ++YMSSGPVV MVW+GL+VVK G
Sbjct: 65  IEYMSSGPVVAMVWQGLDVVKQG 87


>AC006644-2|AAF39837.1|  118|Caenorhabditis elegans Hypothetical
           protein F55A3.6 protein.
          Length = 118

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +3

Query: 297 RPFFPGLVKYMSSGPVVPMVWEGLNVVK 380
           +PFFP L+ YMSSGPVV M+WEG +VVK
Sbjct: 33  KPFFPLLIDYMSSGPVVAMLWEGCDVVK 60


>AC025721-13|AAR85897.1|  139|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.15 protein.
          Length = 139

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 123 VADQRERTFLMV-KPDGV-QRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLAS 296
           V  Q    FL+V KP+ V  R L    +      G ++  ++ +  S  L +Q Y+    
Sbjct: 4   VGSQNALKFLVVLKPEIVAHRVLAQVALSELRSNGIEIEEMRQMKISGSLAKQLYAQHQG 63

Query: 297 RPFFPGLVKYMSSGPVVPM 353
           + F+  LV+++SSGPV+ M
Sbjct: 64  KFFYDRLVRHISSGPVIAM 82


>U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical
           protein R03H10.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 264 LLQQHYSDLASRPFFPGLVKYMSSGPVVPMVW 359
           LL + + ++ S   +PG V+++   P++P  W
Sbjct: 144 LLDRCWKNVDSMELYPGTVQFLDKLPIIPSNW 175


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 188  RHDHRTFRKKRFQISWIKIRLALGRVAAATLQ*LSVPPVFPW 313
            +H     + ++ +IS     + L  VA  T   LS  PVFPW
Sbjct: 1824 KHSDMCAKWQKREISNFDYLMFLNTVAGRTFNDLSQYPVFPW 1865


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 188  RHDHRTFRKKRFQISWIKIRLALGRVAAATLQ*LSVPPVFPW 313
            +H     + ++ +IS     + L  VA  T   LS  PVFPW
Sbjct: 1824 KHSDMCAKWQKREISNFDYLMFLNTVAGRTFNDLSQYPVFPW 1865


>Z22181-12|CAA80188.1|  161|Caenorhabditis elegans Hypothetical
           protein ZK632.13 protein.
          Length = 161

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 357 KPWEQPVQNSCILQDQGKTGGTLSHC 280
           K +E P +N   L++   T  T+SHC
Sbjct: 73  KGYESPYKNISFLKEDAVTVNTMSHC 98


>AY324109-1|AAP85302.1|  161|Caenorhabditis elegans LIN-52 protein.
          Length = 161

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 357 KPWEQPVQNSCILQDQGKTGGTLSHC 280
           K +E P +N   L++   T  T+SHC
Sbjct: 73  KGYESPYKNISFLKEDAVTVNTMSHC 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,803,825
Number of Sequences: 27780
Number of extensions: 163534
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)