Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O19
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    27   3.0  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    26   5.2  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    26   5.2  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    26   5.2  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    26   5.2  
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p...    25   9.1  
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.        25   9.1  
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ...    25   9.1  
AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    25   9.1  

>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -2

Query: 155 HQRIAPVSLHLHS-PPLVQPCKLPPCIIPNTIHAFSQNLL*SYPDCTLT 12
           ++ + P S H  + PP VQ    PPC    T    +     + P C  T
Sbjct: 186 YRTVPPASNHYETVPPAVQTTPQPPCTPRTTTTTTTTTTTTTLPPCVYT 234


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 170 LSQ*QHQRIAPVSLHLHSPP 111
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 170 LSQ*QHQRIAPVSLHLHSPP 111
           + Q QHQ   P  +H+H+PP
Sbjct: 346 MHQHQHQIAPPQRIHIHNPP 365


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 170 LSQ*QHQRIAPVSLHLHSPP 111
           + Q QHQ   P  +H+H+PP
Sbjct: 375 MHQHQHQIAPPQRIHIHNPP 394


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 104 QPCKLPPCIIPNT 66
           +PCK PPCII  T
Sbjct: 256 KPCKNPPCIIKTT 268


>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 155 HQRIAPVSLHLHSPPLVQPCKLPP 84
           +++++PV+ HL   PL+Q  K  P
Sbjct: 671 NEQLSPVTFHLFILPLIQALKYEP 694


>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
          Length = 1167

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 155 HQRIAPVSLHLHSPPLVQPCKLPP 84
           +++++PV+ HL   PL+Q  K  P
Sbjct: 692 NEQLSPVTFHLFILPLIQALKYEP 715


>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 155 HQRIAPVSLHLHSPPLVQPCKLPP 84
           +++++PV+ HL   PL+Q  K  P
Sbjct: 671 NEQLSPVTFHLFILPLIQALKYEP 694


>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 116 PPLVQPCKLP 87
           PPL+QPC+LP
Sbjct: 233 PPLLQPCQLP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,255,309
Number of Sequences: 27780
Number of extensions: 106939
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)