Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O16
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   0.90 
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   2.7  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.3  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   6.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   8.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   8.4  

>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   ARGRLEYSYSGAIVTAWAGPSHWKLKNNRSS 93
           A G  EY +  ++   WAGP HW+++  R +
Sbjct: 415 ANGVYEY-FDKSMKKNWAGPEHWRIQALRKN 444


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 362 KNNLRKCDSSSPLSIGVLKFASFHVCPVAKVFLLIM 255
           + +L  CD+     IG  +F  F  CP AK   LI+
Sbjct: 344 EKHLGTCDTFEERQIGGDRFNLFEGCPKAKTCTLIL 379


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 397 DPSCVTSPLSASRIIYGNAT 338
           DP  +T PLS++R I GNAT
Sbjct: 807 DPRELTVPLSSTRGIKGNAT 826


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 235 PTQPAKIMISRKTLATGHTWNEANFKTP 318
           P QP K+ +S + L   H  N+ +   P
Sbjct: 460 PNQPVKVRVSYQKLLKSHVMNKLHMAHP 487


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  SHWKLKNNRSSKMSERDQLPG 123
           S+ K KNN S K S ++++PG
Sbjct: 171 SNDKSKNNESLKKSSKNEIPG 191


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 246  GQDHDQQEDFSYGTHVERGELQDSY 320
            G +  QQ+ F YGTH     +  SY
Sbjct: 2000 GLNDSQQQPFHYGTHYSSAMIVCSY 2024


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 70  KLKNNRSSKMSER--DQLPGARLTMDARRPARTKRQL 174
           KL++ R  ++ ER    +PG R   D RRPA+T+ ++
Sbjct: 155 KLEDERH-RIIERAMKMVPGFRAPSDYRRPAKTQEKV 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,945
Number of Sequences: 5004
Number of extensions: 24902
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)