Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O16
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0204 + 19246633-19246938,19247091-19247192,19247314-192474... 36 0.017
07_01_0772 - 5923033-5923645,5923721-5923923,5924006-5924893,592... 31 0.50
05_03_0449 - 14161812-14162902,14163121-14163153,14164248-141644... 30 0.66
03_05_0266 + 22537578-22538081 29 1.1
05_01_0545 - 4756266-4757510 29 1.5
03_06_0395 + 33616304-33616494,33616863-33617095,33617213-336173... 29 2.0
03_02_0127 + 5777564-5779879 29 2.0
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 28 3.5
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185... 28 3.5
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428... 27 4.6
08_01_0724 - 6426263-6426514,6428511-6428742,6429081-6429400,643... 27 4.6
01_02_0079 + 10909570-10909745,10910670-10910732,10911489-109120... 27 4.6
01_06_0686 - 31246156-31246555,31246667-31246884,31247007-312471... 27 8.1
>01_05_0204 +
19246633-19246938,19247091-19247192,19247314-19247431,
19247977-19247996,19248122-19248160,19248282-19248342,
19248464-19248664,19248756-19249057,19249448-19249601,
19249683-19249939,19250015-19250045,19251027-19251166,
19252067-19252177,19253071-19253283
Length = 684
Score = 35.5 bits (78), Expect = 0.017
Identities = 32/120 (26%), Positives = 47/120 (39%)
Frame = +1
Query: 34 AIVTAWAGPSHWKLKNNRSSKMSERDQLPGARLTMDARRPARTKRQLDFTGAGLAFDCRA 213
A AWAGP HWK + K + D +P DA + + KR D +
Sbjct: 417 AKTNAWAGPEHWKYR-----KAKDLDPVPTKPDDSDAPKKTKKKRGKDEPDIDFSKALEH 471
Query: 214 EPAGEYEPTQPAKIMISRKTLATGHTWNEANFKTPIDRGLDESHFRKLFLRRKVVMLRKR 393
+ + P + +K ++ AT +N K P D KLFL V+ L +R
Sbjct: 472 DMPNIFAPPKNSKSLLLPANRAT------SNNKLPEDCHYRPESLVKLFLLPDVLCLARR 525
>07_01_0772 -
5923033-5923645,5923721-5923923,5924006-5924893,
5925010-5925058,5925185-5925275,5925405-5925661,
5925770-5925960
Length = 763
Score = 30.7 bits (66), Expect = 0.50
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 329 PLSIGVLKFASFHVCPVAKVFLLIMILAGCVGSYSPAGSARQSNASPA 186
P+++G L++ FHVCPV + G +++P G NA A
Sbjct: 648 PVTLGALEYEVFHVCPVRAI---AAAPGGAAVAFAPVGLLDMFNAGGA 692
>05_03_0449 -
14161812-14162902,14163121-14163153,14164248-14164457,
14166348-14167011,14167129-14167287,14167449-14167563,
14167672-14167867,14167965-14168286,14168695-14168865,
14169486-14169495,14169932-14170285,14172429-14172553
Length = 1149
Score = 30.3 bits (65), Expect = 0.66
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 253 IMISRKTLATGHTWNEANFKTPIDRGLDESHFRKLFLR 366
+M RK + TGH ++ N IDRG+ E F L R
Sbjct: 198 MMNIRKVVTTGHQLHKGNLLGSIDRGIPEGPFPHLHSR 235
>03_05_0266 + 22537578-22538081
Length = 167
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 263 LIMILAGCVGSYSPAGSARQSNASPAPVKS 174
L+++LA GS+ PA ++ + SPAP S
Sbjct: 5 LVILLAVAAGSWQPAATSTPATVSPAPAVS 34
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.1 bits (62), Expect = 1.5
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -2
Query: 275 KVFLLIMILAGCVGSYSPAGSARQSNASPAPVKSN*RFVRAGLLASMVRRAPGNWSRSDI 96
+V L+ M++ V AG + A+ V RF A L + V A W ++ I
Sbjct: 4 EVVLVAMVVVVVVSWVVAAGGEAAAAAAAVVVDPAWRFPSARLRDAYV--ALQTWKQTAI 61
Query: 95 FDERLFLSFQWLGPA 51
F + L+ W+GPA
Sbjct: 62 FSDPKNLTADWVGPA 76
>03_06_0395 +
33616304-33616494,33616863-33617095,33617213-33617303,
33617882-33617930,33618123-33618214,33618285-33618398,
33618473-33619172,33619269-33619336,33619626-33619760,
33619862-33620079,33620169-33620593
Length = 771
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 329 PLSIGVLKFASFHVCPVAKV 270
P+++ VL+F FHVCPV V
Sbjct: 643 PVTLKVLEFELFHVCPVMTV 662
>03_02_0127 + 5777564-5779879
Length = 771
Score = 28.7 bits (61), Expect = 2.0
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Frame = +3
Query: 114 VARGASDH-GCEETGADETSVGFHRGXXXXXXXXXXXXXXXTDATGQDHDQQEDFSYGTH 290
V R SD G + + S+ G Q+HD Q+ F G H
Sbjct: 258 VRRSNSDKTGRSSMNSSKPSINGKEGLHMARSSFSVESKMDVSVVIQEHDVQDSFIRGLH 317
Query: 291 VE---RGELQDSYR*RTGRVAFP*IILEAESGDVTQEGSREEQGRG 419
VE G D+ + P I+ SGD E +R+ + G
Sbjct: 318 VESTLAGVSSDTTECVDESRSAPEEIIRPVSGDDGMESNRKNEASG 363
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 36 HSDRVGRTQPLEAQEQPLIKDVRTGP 113
H RVG + LE QE+P + DV P
Sbjct: 226 HEGRVGEARGLEVQERPRVGDVPERP 251
>07_01_0003 +
16711-17016,17107-17177,17269-17461,17929-17984,
18511-18588,18873-18929,19396-19903
Length = 422
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 109 DQLPGARLTMDARRPARTKRQLDFTGAGLAF 201
D+LPG+R+ P R + QL FTG F
Sbjct: 238 DRLPGSRIAFVGDGPFRAELQLMFTGMPAVF 268
>12_02_1155 + 26541137-26541142,26541244-26542623,26542730-26542852,
26542996-26543168,26543332-26543572,26543931-26544023,
26544092-26544232,26544358-26544450,26544633-26544837,
26544993-26545078,26545532-26545620,26545736-26545820,
26545898-26545954,26546319-26546399,26547130-26547321
Length = 1014
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 21 LLQRRHSDRVGRTQPLEAQEQPLIKDVRTGPVARGASDH--GCEETGADETSVGF 179
LL R+G T E + P KD+ +AR +D EE GA SV +
Sbjct: 889 LLIENPVQRLGATGAGEVKAHPFFKDINWDMIARQQADEFGSMEEFGAPSLSVKY 943
>08_01_0724 -
6426263-6426514,6428511-6428742,6429081-6429400,
6433071-6433163,6433188-6433354,6433432-6433846
Length = 492
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 45 RVGRTQPLEAQEQPLIKDVRTGPVARGASDHGCEETGADETS 170
R P+ P+I+ R G V R DH E AD+T+
Sbjct: 307 RARSAAPVGTMAFPMIRCTREGKVKRKPDDHELEGKTADQTA 348
>01_02_0079 +
10909570-10909745,10910670-10910732,10911489-10912020,
10912112-10912477
Length = 378
Score = 27.5 bits (58), Expect = 4.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 25 YSGAIVTAWAGPSHWKLKNNRSS 93
Y G ++ WA P HW+ + +S
Sbjct: 150 YKGPLLRLWASPIHWRFAESAAS 172
>01_06_0686 -
31246156-31246555,31246667-31246884,31247007-31247129,
31247304-31247501,31247596-31247994
Length = 445
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = -2
Query: 257 MILAGCVGSYSPAGSARQSNASPA---PVKSN*RFVRAGLLASM----VRRAPGNWSRSD 99
++ G G Y P S + N +P P F+R + + V P NW +
Sbjct: 258 LLTVGTEGFYGPTSSQEKLNINPGEWFPNNYGADFIRNSKIQDIDFASVHVYPDNWLQHA 317
Query: 98 IFDERLFLSFQWL 60
DE+L +W+
Sbjct: 318 SLDEKLKFMTRWI 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,537
Number of Sequences: 37544
Number of extensions: 216801
Number of successful extensions: 826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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