Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O16
         (420 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12173-1|CAA78164.1|  552|Homo sapiens N-acetylglucosamine-6-sul...    31   1.6  
D38553-1|BAA07556.1|  747|Homo sapiens HCAP-H protein.                 31   1.6  
BC024211-1|AAH24211.1|  741|Homo sapiens non-SMC condensin I com...    31   1.6  
BC012482-1|AAH12482.1|  552|Homo sapiens glucosamine (N-acetyl)-...    31   1.6  
AK223484-1|BAD97204.1|  552|Homo sapiens glucosamine (N-acetyl)-...    31   1.6  

>Z12173-1|CAA78164.1|  552|Homo sapiens
           N-acetylglucosamine-6-sulphatase protein.
          Length = 552

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 329 PLSIGVLKFASFHVCPVAKVFLLIMILAGCVGSYSPAGSARQSN 198
           PL+ G L+  S    P     LL+++L GC+G +  A   R+ N
Sbjct: 5   PLAPGRLRRGSPRHLPSCSPALLLLVLGGCLGVFGVAAGTRRPN 48


>D38553-1|BAA07556.1|  747|Homo sapiens HCAP-H protein.
          Length = 747

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 16  EYSY-SGAIVTAWAGPSHWKLKNNR 87
           EYSY S   ++ WAGP HW+ +  R
Sbjct: 433 EYSYFSPRTMSMWAGPDHWRFRPRR 457


>BC024211-1|AAH24211.1|  741|Homo sapiens non-SMC condensin I
           complex, subunit H protein.
          Length = 741

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 16  EYSY-SGAIVTAWAGPSHWKLKNNR 87
           EYSY S   ++ WAGP HW+ +  R
Sbjct: 427 EYSYFSPRTMSMWAGPDHWRFRPRR 451


>BC012482-1|AAH12482.1|  552|Homo sapiens glucosamine
           (N-acetyl)-6-sulfatase (Sanfilippo disease IIID)
           protein.
          Length = 552

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 329 PLSIGVLKFASFHVCPVAKVFLLIMILAGCVGSYSPAGSARQSN 198
           PL+ G L+  S    P     LL+++L GC+G +  A   R+ N
Sbjct: 5   PLAPGRLRRGSPRHLPSCSPALLLLVLGGCLGVFGVAAGTRRPN 48


>AK223484-1|BAD97204.1|  552|Homo sapiens glucosamine
           (N-acetyl)-6-sulfatase precursor variant protein.
          Length = 552

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 329 PLSIGVLKFASFHVCPVAKVFLLIMILAGCVGSYSPAGSARQSN 198
           PL+ G L+  S    P     LL+++L GC+G +  A   R+ N
Sbjct: 5   PLAPGRLRRGSPRHLPSCSPALLLLVLGGCLGVFGVAAGTRRPN 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,229,586
Number of Sequences: 237096
Number of extensions: 1153349
Number of successful extensions: 6862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6862
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)