Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_O16
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    31   0.25 
Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical pr...    30   0.77 
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 237 DATGQDHDQQEDFSYGTHVERGELQDSYR*RTGRVAFP*IILEAESGDVTQEGSREEQGR 416
           DA     D ++ FSYG HV +GE +D      G+V     I++ E  +  +E + E+  R
Sbjct: 94  DAFKISTDSEDGFSYGHHVSKGEKKDD----LGKVGQAERIIQEEMEERAKENTEEKLSR 149


>Z66524-5|CAC70104.1|  566|Caenorhabditis elegans Hypothetical
           protein T13H5.8 protein.
          Length = 566

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 229 YEPTQPAKIMISRKTLATGHTWNEANFKTPIDRGLDESHFRKLFLRRKVVML 384
           YEPT  AK+++   T  + H   +  FK   D+ +DE   R LF    +V+L
Sbjct: 246 YEPTSVAKLLLLTSTARSTHQLMKHGFK---DKDVDE--LRGLFTETSIVLL 292


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/80 (25%), Positives = 30/80 (37%)
 Frame = +1

Query: 13  LEYSYSGAIVTAWAGPSHWKLKNNRSSKMSERDQLPGARLTMDARRPARTKRQLDFTGAG 192
           L Y Y G +  +W  P H+      +  +S+     G R+  +   P     QL      
Sbjct: 529 LHYYYHGCVSWSWFYPHHY------APFISDVRGFVGMRMEFELSEPFHPFEQLLAVLPE 582

Query: 193 LAFDCRAEPAGEYEPTQPAK 252
            + DC   P  E   + PAK
Sbjct: 583 ASADCLPRPLRELMSSDPAK 602


>Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical
           protein K01G5.10 protein.
          Length = 248

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +1

Query: 4   RGRLEYSYSGAIVTAWAGPSHWKLKNNRSSKMSERDQLPGARLTMDARRPARTKRQL 174
           +GR+E   +GA+   +A P  WKL  + + +  ++ +L G  L + +   +R K  L
Sbjct: 103 KGRVEV-IAGALYNHYATPEPWKLVESDTRQTLQKLRLKGIILVVISNFDSRLKSLL 158


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 268 KTLATGHTWN---EANFKTPIDRGLDESHFRKLFLRRK 372
           K LA+   WN    A+ KTP+D  L+ +HF  +  ++K
Sbjct: 74  KRLASFTDWNLVVVADTKTPLDWELENAHFLSVEFQKK 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,425,048
Number of Sequences: 27780
Number of extensions: 158138
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)