Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_O15
(303 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 32 0.021
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 25 2.4
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 25 2.4
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 3.2
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 3.2
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 3.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 24 5.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 5.6
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 23 7.5
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 23 9.9
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 31.9 bits (69), Expect = 0.021
Identities = 26/94 (27%), Positives = 40/94 (42%)
Frame = +3
Query: 9 DGCITQWDXXXXXXXXXXXXXXXXXXXXMRAGRDGSLLTIGIDDTLRRAMPQDEGGVPAY 188
DG + WD M D ++TIG+DDTL R + +G
Sbjct: 336 DGTVLSWDIGKQKAFPLVGESHTNQVMQMIMA-DDHVITIGMDDTL-RVIDIKQGCFA-- 391
Query: 189 TDSAIPLGSQPRAMDHLIDEDVTIVATVNELTVI 290
D+ P G QP + + ED I+ TV+++ V+
Sbjct: 392 KDNVFPTGYQPIGVCSV--EDCLILVTVSDIQVL 423
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 25.0 bits (52), Expect = 2.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -2
Query: 290 DHRQLVNGGHDGDVLVDEVVHRTR------LRPERDGTIRVSRNTAF 168
D ++ N H G+V +DE++ R L E GT++ TAF
Sbjct: 91 DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAF 137
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 25.0 bits (52), Expect = 2.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -2
Query: 290 DHRQLVNGGHDGDVLVDEVVHRTR------LRPERDGTIRVSRNTAF 168
D ++ N H G+V +DE++ R L E GT++ TAF
Sbjct: 91 DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAF 137
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 3.2
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 99 AGRDGSLLTIGIDDTLRRAMPQDEGGVP--AYTDSAIP 206
AG + S +T+G++ T A + +GG P Y S+ P
Sbjct: 33 AGLNASNITVGVNVTNTTAFSKRDGGFPDGVYDCSSFP 70
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 204 PLGSQPRAMDHLIDEDVTIVATVNELTVIVG 296
P G PR++D L+D+D+ + IVG
Sbjct: 214 PPGQLPRSIDILLDDDLVDTVKPGDRVNIVG 244
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 3.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 290 DHRQLVNGGHDGDVLVDE 237
DH +L++G HDG V V E
Sbjct: 483 DHLRLISGAHDGVVKVWE 500
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 23.8 bits (49), Expect = 5.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 292 TITVNSLTVATMVTSSSMRWSIARGCDPSGMALSV*AGTPPSSCGIARLS-VSSMPMVRS 116
TI +S T +T V+ +S S + G + + PS+ + L +S P+ S
Sbjct: 267 TIDSSSFTSSTPVSLTSSSTS-SSGSSQDSTTID----STPSTIATSTLQPTTSSPITTS 321
Query: 115 EPSLPARMPLTW 80
PSL + +P T+
Sbjct: 322 APSLSSALPTTY 333
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 172 PSSCGIARLSVSSMPMVRSEPSLPARMP 89
P + G+ L++S PMV +LP MP
Sbjct: 509 PGAPGMPNLNMSQPPMVPPGMALPPGMP 536
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 201 IPLGSQPRAMDHLIDEDVTIVATVNELTVIVG 296
IP GS PR +D ++ D+ A + G
Sbjct: 290 IPTGSMPRTLDVILRGDIVERAKAGDKCAFTG 321
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 23.0 bits (47), Expect = 9.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 290 DHRQLVNGGHDGDVLVDEVVHRTRLR 213
D L++G DG+VLV + V R LR
Sbjct: 307 DASLLISGDKDGNVLVWDSVSRQVLR 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 970,921
Number of Sequences: 5004
Number of extensions: 15463
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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